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IJDMB
2010
61views more  IJDMB 2010»
13 years 5 months ago
On a novel coalescent model for genome-wide evolution of Copy Number Variations
: Since we are limited in our knowledge of human demographic history and variations of recombination and mutation rates, large-scale computer simulation is a necessary tool in gene...
Antonina Mitrofanova, Bhubaneswar (Bud) Mishra
IJDMB
2006
125views more  IJDMB 2006»
13 years 6 months ago
Bi-level clustering of mixed categorical and numerical biomedical data
: Biomedical data sets often have mixed categorical and numerical types, where the former represent semantic information on the objects and the latter represent experimental result...
Bill Andreopoulos, Aijun An, Xiaogang Wang
IJDMB
2006
90views more  IJDMB 2006»
13 years 6 months ago
An efficient motif discovery algorithm with unknown motif length and number of binding sites
: Most motif discovery algorithms from DNA sequences require the motif's length as input. Styczynski et al. introduced the Extended (l,d)-Motif Problem (EMP) where the motif&#...
Henry C. M. Leung, Francis Y. L. Chin
IJDMB
2007
110views more  IJDMB 2007»
13 years 6 months ago
Transductive learning with EM algorithm to classify proteins based on phylogenetic profiles
: Phylogenetic profiles of proteins  strings of ones and zeros encoding respectively the presence and absence of proteins in a group of genomes  have recently been used to id...
Roger A. Craig, Li Liao
IJDMB
2010
216views more  IJDMB 2010»
13 years 5 months ago
Struct-NB: predicting protein-RNA binding sites using structural features
: We explore whether protein-RNA interfaces differ from non-interfaces in terms of their structural features and whether structural features vary according to the type of the bound...
Fadi Towfic, Cornelia Caragea, David C. Gemperline...