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JCC
2010
103views more  JCC 2010»
13 years 9 months ago
Conformational behavior of simple furanosides studied by optical rotation
: Experimental and theoretical specific optical rotations (OR) of anhydro, epithio, and epiminoderivatives of methyl tetrofuranosides in chloroform solutions have been compared an...
Jakub Kaminský, Ivan Raich, Katerina Tomc&a...
JCC
2010
113views more  JCC 2010»
13 years 9 months ago
MDLab: A molecular dynamics simulation prototyping environment
Molecular dynamics (MD) simulation involves solving Newton’s equations of motion for a system of atoms, by calculating forces and updating atomic positions and velocities over a...
Trevor M. Cickovski, Santanu Chatterjee, Jacob Wen...
JCC
2010
95views more  JCC 2010»
13 years 9 months ago
Computational studies on electron and proton transfer in phenol-imidazole-base triads
: The electron and proton transfer in phenol-imidazole-base systems (base 5 NH2 2 or OH2 ) were investigated by density-functional theory calculations. In particular, the role of b...
Shihai Yan, Sunwoo Kang, Tomoyuki Hayashi, Shaul M...
JCC
2011
133views more  JCC 2011»
13 years 5 months ago
MIBPB: A software package for electrostatic analysis
: The Poisson–Boltzmann equation (PBE) is an established model for the electrostatic analysis of biomolecules. The development of advanced computational techniques for the soluti...
Duan Chen, Zhan Chen, Changjun Chen, Weihua Geng, ...
JCC
2011
154views more  JCC 2011»
13 years 1 months ago
Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database
: Docking is one of the most commonly used techniques in drug design. It is used for both identifying correct poses of a ligand in the binding site of a protein as well as for the ...
Dariusz Plewczynski, Michal Lazniewski, Rafal Augu...