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106
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RECOMB
2004
Springer
16 years 3 months ago
Maximum likelihood resolution of multi-block genotypes
We present a new algorithm for the problems of genotype phasing and block partitioning. Our algorithm is based on a new stochastic model, and on the novel concept of probabilistic...
Gad Kimmel, Ron Shamir
154
Voted
RECOMB
2004
Springer
16 years 3 months ago
Reconstructing reticulate evolution in species: theory and practice
We present new methods for reconstructing reticulate evolution of species due to events such as horizontal transfer or hybrid speciation; both methods are based upon extensions of...
Luay Nakhleh, Tandy Warnow, C. Randal Linder
133
Voted
RECOMB
2004
Springer
16 years 3 months ago
Interface surfaces for protein-protein complexes
Protein-protein interactions, which form the basis for most cellular processes, result in the formation of protein interfaces. Believing that the local shape of proteins is crucia...
Yih-En Andrew Ban, Herbert Edelsbrunner, Johannes ...
143
Voted
RECOMB
2004
Springer
16 years 3 months ago
Probabilistic discovery of overlapping cellular processes and their regulation
In this paper, we explore modeling overlapping biological processes. We discuss a probabilistic model of overlapping biological processes, gene membership in those processes, and ...
Alexis Battle, Eran Segal, Daphne Koller
RECOMB
2004
Springer
16 years 3 months ago
Aligning alignments exactly
d abstract) John Kececioglu and Dean Starrett Department of Computer Science The University of Arizona Tucson AZ 85721, USA A basic computational problem that arises in both the...
John D. Kececioglu, Dean Starrett