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    ACSW
    2006
    170views Security Privacy» more  ACSW 2006»
    Toward building grid applications in bioinformatics
    14 years 26 days ago
    Toward building grid applications in bioinformatics
    Download  crpit.com
    In silico bioinformatics experiments involve integration of and access to computational tools and biological databases. The emerging grid computing technologies enable bioinformat...
    Xiujun Gong, Kensuke Nakamura, Kei Yura, Nobuhiro ...
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    WOB
    2008
    101views Bioinformatics» more  WOB 2008»
    Top-Down Hierarchical Ensembles of Classifiers for Predicting G-Protein-Coupled-Receptor Functions
    14 years 26 days ago
    Top-Down Hierarchical Ensembles of Classifiers for Predicting G-Protein-Coupled-Receptor Functions
    Download  www.cs.kent.ac.uk
    Abstract. Despite the recent advances in Molecular Biology, the function of a large amount of proteins is still unknown. An approach that can be used in the prediction of a protein...
    Eduardo P. Costa, Ana Carolina Lorena, André...
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    WOB
    2008
    128views Bioinformatics» more  WOB 2008»
    Tests for Gene Clusters Satisfying the Generalized Adjacency Criterion
    14 years 26 days ago
    Tests for Gene Clusters Satisfying the Generalized Adjacency Criterion
    Download  albuquerque.bioinformatics.uottawa.ca
    Abstract. We study a parametrized definition of gene clusters that permits control over the trade-off between increasing gene content versus conserving gene order within a cluster....
    Ximing Xu, David Sankoff
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    BIOCOMP
    2008
    135views Bioinformatics» more  BIOCOMP 2008»
    Prediction of Protein Function Using Graph Container and Message Passing
    14 years 27 days ago
    Prediction of Protein Function Using Graph Container and Message Passing
    Download  www.cs.siu.edu
    We introduce a novel parameter called container flux, which is used to measure the information sharing capacity between two distinct nodes in a graph. Other useful information, bot...
    Hongbo Zhou, Qiang Shawn Cheng, Mehdi Zargham
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    BIOCOMP
    2008
    111views Bioinformatics» more  BIOCOMP 2008»
    Stochastic Simulation Algorithms for Chemical Reactions
    14 years 27 days ago
    Stochastic Simulation Algorithms for Chemical Reactions
    Download  jigcell.cs.vt.edu
    Tae-Hyuk Ahn, Yang Cao, Layne T. Watson
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    BIOCOMP
    2008
    128views Bioinformatics» more  BIOCOMP 2008»
    Inverse protein folding in 3D hexagonal prism lattice under HP model
    14 years 27 days ago
    Inverse protein folding in 3D hexagonal prism lattice under HP model
    Download  www.pims.math.ca
    Alireza Hadj Khodabakhshi, Ján Manuch, Aras...
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    BIOCOMP
    2008
    124views Bioinformatics» more  BIOCOMP 2008»
    Analysis of Microarray Titration Experiments
    14 years 27 days ago
    Analysis of Microarray Titration Experiments
    Download  gauss.dbb.georgetown.edu
    In this paper we introduce a novel approach for the analysis of microarray titration experiments. The test introduced here can be used more generally for drug-dosage effect or time...
    Ionut Bebu, Françoise Seillier-Moiseiwitsch...
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    BIOCOMP
    2008
    140views Bioinformatics» more  BIOCOMP 2008»
    Analysis of Protein-Ligand Interactions Using Localized Stereochemical Features
    14 years 27 days ago
    Analysis of Protein-Ligand Interactions Using Localized Stereochemical Features
    Download  faculty.cs.tamu.edu
    Computational analyses of protein structure-function relationships have traditionally been based on sequence homology, fold family analysis and 3D motifs/templates. Previous struct...
    Reetal Pai, James C. Sacchettini, Thomas R. Ioerge...
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    BIOCOMP
    2008
    93views Bioinformatics» more  BIOCOMP 2008»
    Discoveries in shRNA Design
    14 years 27 days ago
    Discoveries in shRNA Design
    Download  ww2.sjc.edu
    -- To successfully apply RNAi, the very first step is to design functional siRNA or shRNA sequences targeting specific genes. Many characteristics of functional synthetic siRNAs ha...
    Hong Zhou, Xiao Zeng, Joseph Manthey
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    BIOCOMP
    2008
    146views Bioinformatics» more  BIOCOMP 2008»
    Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling
    14 years 27 days ago
    Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling
    Download  www.biomedcentral.com
    Background: Inferring a gene regulatory network (GRN) from high throughput biological data is often an under-determined problem and is a challenging task due to the following reas...
    Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Ro...
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