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ESE
2006
100views Database» more  ESE 2006»
13 years 11 months ago
An evaluation of combination strategies for test case selection
This paper presents results from a comparative evaluation of five combination strategies. Combination strategies are test case selection methods that combine "interesting&quo...
Mats Grindal, Birgitta Lindström, Jeff Offutt...
BMCBI
2007
174views more  BMCBI 2007»
13 years 11 months ago
ESTuber db: an online database for Tuber borchii EST sequences
Background: The ESTuber database (http://www.itb.cnr.it/estuber) includes 3,271 Tuber borchii expressed sequence tags (EST). The dataset consists of 2,389 sequences from an in-hou...
Barbara Lazzari, Andrea Caprera, Cristian Cosentin...
EOR
2006
117views more  EOR 2006»
13 years 11 months ago
Heuristics for selecting robust database structures with dynamic query patterns
The success of a company increasingly depends on timely information (internal or external) being available to the right person at the right time for crucial managerial decision-ma...
Andrew N. K. Chen, Paulo B. Goes, Alok Gupta, Jame...
BMCBI
2007
102views more  BMCBI 2007»
13 years 11 months ago
Setting up a large set of protein-ligand PDB complexes for the development and validation of knowledge-based docking algorithms
Background: The number of algorithms available to predict ligand-protein interactions is large and ever-increasing. The number of test cases used to validate these methods is usua...
Luis A. Diago, Persy Morell, Longendri Aguilera, E...
BMCBI
2006
103views more  BMCBI 2006»
13 years 11 months ago
Meta-All: a system for managing metabolic pathway information
Background: Many attempts are being made to understand biological subjects at a systems level. A major resource for these approaches are biological databases, storing manifold inf...
Stephan Weise, Ivo Grosse, Christian Klukas, Dirk ...
BMCBI
2006
144views more  BMCBI 2006»
13 years 11 months ago
ProFAT: a web-based tool for the functional annotation of protein sequences
Background: The functional annotation of proteins relies on published information concerning their close and remote homologues in sequence databases. Evidence for remote sequence ...
Charles Richard Bradshaw, Vineeth Surendranath, Bi...
BMCBI
2006
135views more  BMCBI 2006»
13 years 11 months ago
Correcting ligands, metabolites, and pathways
Background: A wide range of research areas in bioinformatics, molecular biology and medicinal chemistry require precise chemical structure information about molecules and reaction...
Martin A. Ott, Gert Vriend
BMCBI
2006
91views more  BMCBI 2006»
13 years 11 months ago
PeanutMap: an online genome database for comparative molecular maps of peanut
Background: Molecular maps have been developed for many species, and are of particular importance for varietal development and comparative genomics. However, despite the existence...
Arun M. Jesubatham, Mark D. Burow
BMCBI
2006
117views more  BMCBI 2006»
13 years 11 months ago
G-InforBIO: integrated system for microbial genomics
Background: Genome databases contain diverse kinds of information, including gene annotations and nucleotide and amino acid sequences. It is not easy to integrate such information...
Naoto Tanaka, Takashi Abe, Satoru Miyazaki, Hideak...
BMCBI
2006
124views more  BMCBI 2006»
13 years 11 months ago
HybGFS: a hybrid method for genome-fingerprint scanning
Background: Protein identification based on mass spectrometry (MS) has previously been performed using peptide mass fingerprinting (PMF) or tandem MS (MS/MS) database searching. H...
Kosaku Shinoda, Nozomu Yachie, Takeshi Masuda, Nao...