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WABI
2007
Springer
122views Bioinformatics» more  WABI 2007»
14 years 5 months ago
Algorithms for the Extraction of Synteny Blocks from Comparative Maps
In comparing genomic maps, it is often difficult to distinguish mapping errors and incorrectly resolved paralogies from genuine rearrangements of the genomes. A solution to this ...
Vicky Choi, Chunfang Zheng, Qian Zhu, David Sankof...
WABI
2007
Springer
109views Bioinformatics» more  WABI 2007»
14 years 5 months ago
A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence
In this paper we introduce a new method of combined synthesis and inference of biological signal transduction networks. A main idea of our method lies in representing observed cau...
Réka Albert, Bhaskar DasGupta, Riccardo Don...
WABI
2007
Springer
14 years 5 months ago
A Graph Clustering Approach to Weak Motif Recognition
The aim of the motif recognition problem is to detect a set of mutually similar subsequences within a collection of biological sequences. The weak motif recognition problem on DNA ...
Christina Boucher, Daniel G. Brown, Paul Church
TACAS
2007
Springer
165views Algorithms» more  TACAS 2007»
14 years 5 months ago
Multi-objective Model Checking of Markov Decision Processes
We study and provide efficient algorithms for multi-objective model checking problems for Markov Decision Processes (MDPs). Given an MDP, M, and given multiple linear-time (ω-regu...
Kousha Etessami, Marta Z. Kwiatkowska, Moshe Y. Va...
TACAS
2007
Springer
124views Algorithms» more  TACAS 2007»
14 years 5 months ago
Deciding Bit-Vector Arithmetic with Abstraction
ion Randal E. Bryant1 , Daniel Kroening2 , Jo¨el Ouaknine3 , Sanjit A. Seshia4 , Ofer Strichman5 , and Bryan Brady4 1 Carnegie Mellon University, Pittsburgh 2 ETH Z¨urich 3 Oxfor...
Randal E. Bryant, Daniel Kroening, Joël Ouakn...
TACAS
2007
Springer
80views Algorithms» more  TACAS 2007»
14 years 5 months ago
Adaptor Synthesis for Real-Time Components
Massimo Tivoli, Pascal Fradet, Alain Girault, Greg...
TACAS
2007
Springer
105views Algorithms» more  TACAS 2007»
14 years 5 months ago
Hoare Logic for Realistically Modelled Machine Code
This paper presents a mechanised Hoare-style programming logic framework for assembly level programs. The framework has been designed to fit on top of operational semantics of rea...
Magnus O. Myreen, Michael J. C. Gordon
TACAS
2007
Springer
118views Algorithms» more  TACAS 2007»
14 years 5 months ago
Checking Pedigree Consistency with PCS
Abstract. Many important problems in bioinformatics and genetics require analyses that are NP-complete. For example, one of the basic problems facing researchers that analyze pedig...
Panagiotis Manolios, Marc Galceran Oms, Sergi Oliv...
TACAS
2007
Springer
74views Algorithms» more  TACAS 2007»
14 years 5 months ago
Shape Analysis by Graph Decomposition
Abstract. Programs commonly maintain multiple linked data structures. Correlations between multiple data structures may often be nonexistent or irrelevant to verifying that the pro...
Roman Manevich, Josh Berdine, Byron Cook, G. Ramal...