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WADS
2007
Springer
180views Algorithms» more  WADS 2007»
14 years 4 months ago
Spanners for Geometric Intersection Graphs
A ball graph is an intersection graph of a set of balls with arbitrary radii. Given a real number t > 1, we say that a subgraph G′ of a graph G is a t-spanner of G, if for eve...
Martin Fürer, Shiva Prasad Kasiviswanathan
WADS
2007
Springer
165views Algorithms» more  WADS 2007»
14 years 4 months ago
A Near Linear Time Approximation Scheme for Steiner Tree Among Obstacles in the Plane
We present a polynomial-time approximation scheme (PTAS) for the Steiner tree problem with polygonal obstacles in the plane with running time O(n log2 n), where n denotes the numb...
Matthias Müller-Hannemann, Siamak Tazari
WADS
2007
Springer
105views Algorithms» more  WADS 2007»
14 years 4 months ago
Finding Small Holes
Jeff Erickson
WADS
2007
Springer
101views Algorithms» more  WADS 2007»
14 years 4 months ago
Edges and Switches, Tunnels and Bridges
Abstract. Edge casing is a well-known method to improve the readability of drawings of non-planar graphs. A cased drawing orders the edges of each edge crossing and interrupts the ...
David Eppstein, Marc J. van Kreveld, Elena Mumford...
WABI
2007
Springer
14 years 4 months ago
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity
Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc
WABI
2007
Springer
110views Bioinformatics» more  WABI 2007»
14 years 4 months ago
Haplotype Inference Via Hierarchical Genotype Parsing
The within-species genetic variation due to recombinations leads to a mosaic-like structure of DNA. This structure can be modeled, e.g. by parsing sample sequences of current DNA w...
Pasi Rastas, Esko Ukkonen
WABI
2007
Springer
157views Bioinformatics» more  WABI 2007»
14 years 4 months ago
Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation
Abstract. Parameter estimation of large bio-pathway models is an important and difficult problem. To reduce the prohibitive computational cost, one approach is to decompose a large...
Geoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S...
WABI
2007
Springer
14 years 4 months ago
Bringing Folding Pathways into Strand Pairing Prediction
Abstract. The topology of β-sheets is defined by the pattern of hydrogenbonded strand pairing. Therefore, predicting hydrogen bonded strand partners is a fundamental step towards...
Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka
WABI
2007
Springer
14 years 4 months ago
HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding
Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop,...
WABI
2007
Springer
102views Bioinformatics» more  WABI 2007»
14 years 4 months ago
Homology Search with Fragmented Nucleic Acid Sequence Patterns
The comprehensive annotation of non-coding RNAs in newly sequenced genomes is still a largely unsolved problem because many functional RNAs exhibit not only poorly conserved sequen...
Axel Mosig, Julian J.-L. Chen, Peter F. Stadler