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WABI
2007
Springer
121views Bioinformatics» more  WABI 2007»
14 years 4 months ago
Seeded Tree Alignment and Planar Tanglegram Layout
The optimal transformation of one tree into another by means of elementary edit operations is an important algorithmic problem that has several interesting applications to computat...
Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabr...
WABI
2007
Springer
14 years 4 months ago
Shotgun Protein Sequencing
Although snake venom proteins have been proven instrumental in the design of blood clotting and cytostatic breast cancer drugs, the main method in use to sequence these unknown pr...
Pavel A. Pevzner
WABI
2007
Springer
133views Bioinformatics» more  WABI 2007»
14 years 4 months ago
RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound
Predicting the secondary structure of an RNA sequence is an important problem in structural bioinformatics. The general RNA folding problem, where the sequence to be folded may con...
Chunmei Liu, Yinglei Song, Louis W. Shapiro
WABI
2007
Springer
102views Bioinformatics» more  WABI 2007»
14 years 4 months ago
On-Line Viterbi Algorithm for Analysis of Long Biological Sequences
Rastislav Srámek, Brona Brejová, Tom...
WABI
2007
Springer
139views Bioinformatics» more  WABI 2007»
14 years 4 months ago
Computability of Models for Sequence Assembly
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...
WABI
2007
Springer
107views Bioinformatics» more  WABI 2007»
14 years 4 months ago
Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps
Marco Vassura, Luciano Margara, Pietro di Lena, Fi...
WABI
2007
Springer
109views Bioinformatics» more  WABI 2007»
14 years 4 months ago
Two Birds, One Stone: Selecting Functionally Informative Tag SNPs for Disease Association Studies
Selecting an informative subset of SNPs, generally referred to as tag SNPs, to genotype and analyze is considered to be an essential step toward effective disease association studi...
Phil Hyoun Lee, Hagit Shatkay
WABI
2007
Springer
14 years 4 months ago
Predicting Protein Folding Kinetics Via Temporal Logic Model Checking
Christopher James Langmead⋆ and Sumit Kumar Jha Department of Computer Science, Carnegie Mellon University We present a novel approach for predicting protein folding kinetics us...
Christopher James Langmead, Sumit Kumar Jha
WABI
2007
Springer
123views Bioinformatics» more  WABI 2007»
14 years 4 months ago
Inverse Sequence Alignment from Partial Examples
When aligning biological sequences, the choice of parameter values for the alignment scoring function is critical. Small changes in gap penalties, for example, can yield radically ...
Eagu Kim, John D. Kececioglu
WABI
2007
Springer
14 years 4 months ago
Topology Independent Protein Structural Alignment
Abstract. Protein structural alignment is an indispensable tool used for many different studies in bioinformatics. Most structural alignment algorithms assume that the structural ...
Joe Dundas, T. Andrew Binkowski, Bhaskar DasGupta,...