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FCCM
2006
IEEE
137views VLSI» more  FCCM 2006»
14 years 6 months ago
Single Pass, BLAST-Like, Approximate String Matching on FPGAs
Abstract: Approximate string matching is fundamental to bioinformatics, and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA imple...
Martin C. Herbordt, Josh Model, Yongfeng Gu, Bhara...
IWOCA
2009
Springer
132views Algorithms» more  IWOCA 2009»
14 years 7 months ago
Fast Convolutions and Their Applications in Approximate String Matching
We develop a method for performing boolean convolutions efficiently in word RAM model of computation, having a word size of w = Ω(log n) bits, where n is the input size. The tech...
Kimmo Fredriksson, Szymon Grabowski
DASFAA
2009
IEEE
136views Database» more  DASFAA 2009»
14 years 7 months ago
A Two-Tire Index Structure for Approximate String Matching with Block Moves
Many applications need to solve the problem of approximate string matching with block moves. It is an NP-Complete problem to compute block edit distance between two strings. Our go...
Bin Wang, Long Xie, Guoren Wang