Background: Natural antisense transcripts (NATs) are coding or non-coding RNAs with sequence complementarity to other transcripts (sense transcripts). These RNAs could potentially...
Reconstructing phylogenies is one of the primary objectives in evolution studies. Efficient software to reconstruct phylogenies based on isolated genes has existed for decades, ye...
Le Vinh, Andres Varon, Daniel Janies, Ward Wheeler
— This paper describes graph-based relational, unsupervised learning algorithm to infer node replacement graph grammar and its application to metabolic pathways. We search for fr...
Jacek P. Kukluk, Chang Hun You, Lawrence B. Holder...
- Diabetic retinopathy is the leading cause of blindness among patients with diabetes mellitus. We investigated the role of several proteins that are likely to be involved in the d...
Background: The ability to rapidly map millions of oligonucleotide fragments to a reference genome is crucial to many high throughput genomic technologies. Results: We propose an ...
Wei Li, Jason S. Carroll, Myles Brown, X. Shirley ...
Background: Genetic regulatory networks (GRN) can be described by differential equations with SUM logic which has been found in many natural systems. Identification of the network...
Abstract—This paper presents a stochastic modelling framework for complex biochemical reaction networks from a component-based perspective. Our approach takes into account the di...
Mila E. Majster-Cederbaum, Nils Semmelrock, Verena...
Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ï...