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BIOINFORMATICS
2011
13 years 3 months ago
Hidden conformations in protein structures
Haim Ashkenazy, Ron Unger, Yossef Kliger
BIOINFORMATICS
2011
13 years 3 months ago
Automatic 3D neuron tracing using all-path pruning
Hanchuan Peng, Fuhui Long, Gene Myers
BIOINFORMATICS
2011
13 years 3 months ago
A method for probing the mutational landscape of amyloid structure
Motivation: Proteins of all kinds can self-assemble into highly ordered β-sheet aggregates known as amyloid fibrils, important both biologically and clinically. However, the spe...
Charles W. O'Donnell, Jérôme Waldisp&...
BIOINFORMATICS
2011
13 years 3 months ago
RuleBender: a visual interface for rule-based modeling
Wen Xu, Adam M. Smith, James R. Faeder, G. Elisabe...
BIOINFORMATICS
2011
13 years 3 months ago
ProDy: Protein Dynamics Inferred from Theory and Experiments
Summary: We developed a Python package, ProDy, for structurebased analysis of protein dynamics. ProDy allows for quantitative characterization of structural variations in heteroge...
Ahmet Bakan, Lidio M. Meireles, Ivet Bahar
BIOINFORMATICS
2011
13 years 3 months ago
RINQ: Reference-based Indexing for Network Queries
We consider the problem of similarity queries in biological network databases. Given a database of networks, similarity query returns all the database networks whose similarity (i...
Günhan Gülsoy, Tamer Kahveci