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BIOINFORMATICS
2011
12 years 11 months ago
libfbi: a C++ implementation for fast box intersection and application to sparse mass spectrometry data
Abstract. This document is a preprint of the following publication: Bioinformatics (2011) 27(8): 1166-1167. Algorithms for sparse data require fast search and subset selection capa...
Marc Kirchner, Buote Xu, Hanno Steen, Judith A. J....
BIOINFORMATICS
2011
12 years 11 months ago
FIMO: scanning for occurrences of a given motif
Charles E. Grant, Timothy L. Bailey, William Staff...
BIOINFORMATICS
2011
12 years 11 months ago
A pipeline for RNA-seq data processing and quality assessment
Angela Goncalves, Andrew Tikhonov, Alvis Brazma, M...
BIOINFORMATICS
2011
12 years 11 months ago
BayesPeak - an R package for analysing ChIP-seq data
Jonathan M. Cairns, Christiana Spyrou, Rory Stark,...
BIOINFORMATICS
2011
12 years 11 months ago
When the Web meets the cell: using personalized PageRank for analyzing protein interaction networks
Motivation: Enormous, and constantly increasing quantity of biological information is represented in protein interaction network databases. Most of these data are freely accessibl...
Gábor Iván, Vince Grolmusz
BIOINFORMATICS
2011
13 years 2 months ago
All-atom knowledge-based potential for RNA structure prediction and assessment
Motivation: Over the recent years, the vision that RNA simply serves as information transfer molecule has dramatically changed. The study of the sequence/structure/function relati...
Emidio Capriotti, Tomás Norambuena, Marc A....
BIOINFORMATICS
2011
13 years 2 months ago
RNA-RNA interaction prediction based on multiple sequence alignments
Andrew X. Li, Manja Marz, Jing Qin, Christian M. R...