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TNN
2010
147views Management» more  TNN 2010»
13 years 6 months ago
State-space analysis of Boolean networks
This paper provides a comprehensive framework for the state space approach to Boolean networks. First, it surveys the authors' recent work on the topic: Using semitensor produ...
Daizhan Cheng, Hongsheng Qi
TCS
2011
13 years 6 months ago
Parameter estimation for Boolean models of biological networks
Boolean networks have long been used as models of molecular networks and play an increasingly important role in systems biology. This paper describes a software package, offered ...
Elena S. Dimitrova, Luis David García-Puent...
ACSD
2010
IEEE
239views Hardware» more  ACSD 2010»
13 years 9 months ago
A Complete Synthesis Method for Block-Level Relaxation in Self-Timed Datapaths
Self-timed circuits present an attractive solution to the problem of process variation. However, implementing selftimed combinational logic can be complex and expensive. This pape...
W. B. Toms, David A. Edwards
BIOINFORMATICS
2005
152views more  BIOINFORMATICS 2005»
13 years 11 months ago
Intervention in context-sensitive probabilistic Boolean networks
Motivation: Intervention in a gene regulatory network is used to help it avoid undesirable states, such as those associated with a disease. Several types of intervention have been...
Ranadip Pal, Aniruddha Datta, Michael L. Bittner, ...
BIBM
2009
IEEE
183views Bioinformatics» more  BIBM 2009»
14 years 4 months ago
Modeling Protein Interaction Networks with Answer Set Programming
—In this paper we propose the use of answer set programming (ASP) to model protein interaction networks. We argue that this declarative formalism rivals the popular boolean netwo...
Timur Fayruzov, Martine De Cock, Chris Cornelis, D...