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    CANDC
    2006
    ACM
    131views Emerging Technology» more  CANDC 2006»
    A comment on "Prediction of protein structural classes by a new measure of information discrepancy"
    14 years 15 days ago
    A comment on "Prediction of protein structural classes by a new measure of information discrepancy"
    Download  biomine.ece.ualberta.ca
    Protein structural class describes the overall folding type of a protein or its domain. A number of methods were developed to predict protein structural class based on its primary...
    Kanaka Durga Kedarisetti, Lukasz A. Kurgan, Scott ...
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    CANDC
    2006
    ACM
    149views Emerging Technology» more  CANDC 2006»
    Hydrophobic collapse in (in silico) protein folding
    14 years 15 days ago
    Hydrophobic collapse in (in silico) protein folding
    Download  cssb.biology.gatech.edu
    A model of hydrophobic collapse, which is treated as the driving force for protein folding, is presented. This model is the superposition of three models commonly used in protein ...
    Michal Brylinski, Leszek Konieczny, Irena Roterman
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    CANDC
    2006
    ACM
    117views Emerging Technology» more  CANDC 2006»
    Dealing with repetitions in sequencing by hybridization
    14 years 15 days ago
    Dealing with repetitions in sequencing by hybridization
    Download  leeds-faculty.colorado.edu
    DNA sequencing by hybridization (SBH) induces errors in the biochemical experiment. Some of them are random and disappear when the experiment is repeated. Others are systematic, i...
    Jacek Blazewicz, Fred Glover, Marta Kasprzak, Wojc...
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    CANDC
    2006
    ACM
    179views Emerging Technology» more  CANDC 2006»
    Prediction of protein subcellular location using hydrophobic patterns of amino acid sequence
    14 years 15 days ago
    Prediction of protein subcellular location using hydrophobic patterns of amino acid sequence
    Download  people.virginia.edu
    The function of eukaryotic protein is closely correlated with its subcellular location. The number of newly found protein sequences entering into data banks is rapidly increasing ...
    Tongliang Zhang, Yongsheng Ding, Kuo-Chen Chou
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    CANDC
    2006
    ACM
    111views Emerging Technology» more  CANDC 2006»
    Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map
    14 years 15 days ago
    Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map
    Download  www.informatics.indiana.edu
    Vertebrate segmentation has been proved to be under a strict temporal control governed by a biological clock, known as the segmentation clock. The present experimental evidence su...
    Sourav Roy, Santiago Schnell, Predrag Radivojac
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    CANDC
    2006
    ACM
    104views Emerging Technology» more  CANDC 2006»
    Identification of functional modules in a PPI network by clique percolation clustering
    14 years 15 days ago
    Identification of functional modules in a PPI network by clique percolation clustering
    Download  madis1.iss.ac.cn
    Large-scale experiments and data integration have provided the opportunity to systematically analyze and comprehensively understand the topology of biological networks and biochem...
    Shi-Hua Zhang, Xue-Mei Ning, Xiang-Sun Zhang
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    CANDC
    2006
    ACM
    104views Emerging Technology» more  CANDC 2006»
    Detecting and aligning peaks in mass spectrometry data with applications to MALDI
    14 years 15 days ago
    Detecting and aligning peaks in mass spectrometry data with applications to MALDI
    Download  bioinformatics.med.yale.edu
    In this paper, we address the peak detection and alignment problem in the analysis of mass spectrometry data. To deal with the peak redundancy problem existing in the MALDI data a...
    Weichuan Yu, Baolin Wu, Ning Lin, Kathy Stone, Ken...
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    CANDC
    2006
    ACM
    83views Emerging Technology» more  CANDC 2006»
    Why substrate depletion has apparent first-order kinetics in enzymatic digestion
    14 years 15 days ago
    Why substrate depletion has apparent first-order kinetics in enzymatic digestion
    Download  www.ima.umn.edu
    A number of enzyme digestion assays show apparent first-order kinetics of reactant depletion. There are four possible explanations of this phenomenon: (i) the reaction is dominate...
    Jeyaraman Srividhya, Santiago Schnell
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    CANDC
    2006
    ACM
    117views Emerging Technology» more  CANDC 2006»
    An RNA folding algorithm including pseudoknots based on dynamic weighted matching
    14 years 15 days ago
    An RNA folding algorithm including pseudoknots based on dynamic weighted matching
    Download  wiki.genomics.purdue.edu
    On the basis of maximum weighted matching (MWM) algorithm, we introduced a dynamic weight related with stem length and used a recursive algorithm to predict RNA secondary structur...
    Haijun Liu, Dong Xu, Jianlin Shao, Yifei Wang
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    CANDC
    2006
    ACM
    84views Emerging Technology» more  CANDC 2006»
    Predicting O-glycosylation sites in mammalian proteins by using SVMs
    14 years 15 days ago
    Predicting O-glycosylation sites in mammalian proteins by using SVMs
    Download  www.sysbio.ac.cn
    O-glycosylation is one of the most important, frequent and complex post-translational modifications. This modification can activate and affect protein functions. Here, we present ...
    Sujun Li, Boshu Liu, Rong Zeng, Yu-Dong Cai, Yixue...
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