Computational Biology

27

ISMB
1998

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The LabFlow System for Workflow Management in Large Scale Biology Research Laboratories

14 years 1 months ago

LabFlowis a workflowmanagementsystem designed for large scale biologyresearch laboratories. It providesa workflowmodelin whichobjects flowfromtask to task under programmaticcontro...

Nathan Goodman, Steve Rozen, Lincoln Stein

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46

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ISMB
1998

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BioSim: A New Qualitative Simulation Environment for Molecular Biology

14 years 1 months ago

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Traditionally, biochemical systems are modelled usingkinetics anddifferential equationsin a quantitative simulator. However,for manybiological processes detailed quantitative info...

Karsten R. Heidtke, Steffen Schulze-Kremer

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32

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ISMB
1998

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A Statistical Theory of Sequence Alignment with Gaps

14 years 1 months ago

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Astatistical theory of local alignmentalgorithms with gaps is presented. Both the linear and logarithmic phases, as well as the phase transition separating the two phases, are des...

Dirk Drasdo, Terence Hwa, Michael Lässig

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40

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ISMB
1998

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Advanced Query Mechanisms for Biological Databases

14 years 1 months ago

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Existing query interfaces for biological databases are either based on fixed forms or textual query languages. Users of a fixed form-based query interface are limited to performin...

I-Min A. Chen, Anthony Kosky, Victor M. Markowitz,...

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34

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ISMB
1998

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Computational Applications of DNA Structural Scales

14 years 1 months ago

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We study from a computational standpoint several different physicalscales associatedwith structural features of DNA sequences, including dinucleotide scales such as base stacking ...

Pierre Baldi, Søren Brunak, Yves Chauvin, A...

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28

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ISMB
1998

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TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources

14 years 1 months ago

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Patricia G. Baker, Andy Brass, Sean Bechhofer, Car...

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25

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ISMB
1998

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Calculating the Exact Probability of Language-Like Patterns in Biomolecular Sequences

14 years 1 months ago

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Kevin Atteson

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45

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ISMB
1998

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Compression of Strings with Approximate Repeats

14 years 1 months ago

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We describe a model for strings of characters that is loosely based on the Lempel Ziv model with the addition that a repeated substring can be an approximate match to the original...

Lloyd Allison, Timothy Edgoose, Trevor I. Dix

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33

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ISMB
2003

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Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup

14 years 1 months ago