Sciweavers

BMCBI
2005
190views more  BMCBI 2005»
13 years 11 months ago
An Entropy-based gene selection method for cancer classification using microarray data
Background: Accurate diagnosis of cancer subtypes remains a challenging problem. Building classifiers based on gene expression data is a promising approach; yet the selection of n...
Xiaoxing Liu, Arun Krishnan, Adrian Mondry
BMCBI
2005
124views more  BMCBI 2005»
13 years 11 months ago
ErmineJ: Tool for functional analysis of gene expression data sets
Background: It is common for the results of a microarray study to be analyzed in the context of biologically-motivated groups of genes such as pathways or Gene Ontology categories...
Homin K. Lee, William Braynen, Kiran Keshav, Paul ...
BMCBI
2005
122views more  BMCBI 2005»
13 years 11 months ago
GenClust: A genetic algorithm for clustering gene expression data
Background: Clustering is a key step in the analysis of gene expression data, and in fact, many classical clustering algorithms are used, or more innovative ones have been designe...
Vito Di Gesù, Raffaele Giancarlo, Giosu&egr...
BMCBI
2005
113views more  BMCBI 2005»
13 years 11 months ago
Normal uniform mixture differential gene expression detection for cDNA microarrays
Background: One of the primary tasks in analysing gene expression data is finding genes that are differentially expressed in different samples. Multiple testing issues due to the ...
Nema Dean, Adrian E. Raftery
BMCBI
2005
114views more  BMCBI 2005»
13 years 11 months ago
Signal transduction pathway profiling of individual tumor samples
Background: Signal transduction pathways convey information from the outside of the cell to transcription factors, which in turn regulate gene expression. Our objective is to anal...
Thomas Breslin, Morten Krogh, Carsten Peterson, Ca...
BIOINFORMATICS
2005
105views more  BIOINFORMATICS 2005»
13 years 11 months ago
MADE4: an R package for multivariate analysis of gene expression data
Summary: MADE4, microarray ade4, is a software package that facilitates multivariate analysis of microarray gene expression data. MADE4 accepts a wide variety of gene expression d...
Aedín C. Culhane, Jean Thioulouse, Guy Perr...
TCSB
2008
13 years 11 months ago
Clustering Time-Series Gene Expression Data with Unequal Time Intervals
Clustering gene expression data given in terms of time-series is a challenging problem that imposes its own particular constraints, namely exchanging two or more time points is not...
Luis Rueda, Ataul Bari, Alioune Ngom
PR
2008
88views more  PR 2008»
13 years 11 months ago
Modified global k
Clustering in gene expression data sets is a challenging problem. Different algorithms for clustering of genes have been proposed. However due to the large number of genes only a ...
Adil M. Bagirov
FUIN
2007
109views more  FUIN 2007»
13 years 11 months ago
Unifying Framework for Rule Semantics: Application to Gene Expression Data
Abstract. The notion of rules is very popular and appears in different flavors, for example as association rules in data mining or as functional dependencies in databases. Their s...
Marie Agier, Jean-Marc Petit, Einoshin Suzuki
KES
2008
Springer
13 years 11 months ago
An Algorithm to Assess the Reliability of Hierarchical Clusters in Gene Expression Data
The validation of clusters discovered in bio-molecular data is a central issue in bioinformatics. Recently, stability-based methods have been successfully applied to the analysis o...
Roberto Avogadri, Matteo Brioschi, Francesca Ruffi...