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IJKDB
2010
170views more  IJKDB 2010»
13 years 8 months ago
Clustering Genes Using Heterogeneous Data Sources
Clustering of gene expression data is a standard exploratory technique used to identify closely related genes. Many other sources of data are also likely to be of great assistance...
Erliang Zeng, Chengyong Yang, Tao Li, Giri Narasim...
ICANN
2009
Springer
13 years 9 months ago
Mining Rules for the Automatic Selection Process of Clustering Methods Applied to Cancer Gene Expression Data
Different algorithms have been proposed in the literature to cluster gene expression data, however there is no single algorithm that can be considered the best one independently on...
André C. A. Nascimento, Ricardo Bastos Cava...
TCBB
2010
136views more  TCBB 2010»
13 years 9 months ago
Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data
— The recent development of methods for extracting precise measurements of spatial gene expression patterns from three-dimensional (3D) image data opens the way for new analyses ...
Oliver Rübel, Gunther H. Weber, Min-Yu Huang,...
NAR
2002
136views more  NAR 2002»
13 years 11 months ago
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
The Gene Expression Omnibus (GEO) project was initiated in response to the growing demand for a public repository for high-throughput gene expression data. GEO provides a flexible...
Ron Edgar, Michael Domrachev, Alex E. Lash
IDA
2002
Springer
13 years 11 months ago
A framework for modelling virus gene expression data
Short, high-dimensional, Multivariate Time Series (MTS) data are common in many fields such as medicine, finance and science, and any advance in modelling this kind of data would b...
Paul Kellam, Xiaohui Liu, Nigel J. Martin, Christi...
BMCBI
2004
181views more  BMCBI 2004»
13 years 11 months ago
Iterative class discovery and feature selection using Minimal Spanning Trees
Background: Clustering is one of the most commonly used methods for discovering hidden structure in microarray gene expression data. Most current methods for clustering samples ar...
Sudhir Varma, Richard Simon
BMCBI
2004
87views more  BMCBI 2004»
13 years 11 months ago
Selection of informative clusters from hierarchical cluster tree with gene classes
Background: A common clustering method in the analysis of gene expression data has been hierarchical clustering. Usually the analysis involves selection of clusters by cutting the...
Petri Törönen
BMCBI
2004
158views more  BMCBI 2004»
13 years 11 months ago
Incremental genetic K-means algorithm and its application in gene expression data analysis
Background: In recent years, clustering algorithms have been effectively applied in molecular biology for gene expression data analysis. With the help of clustering algorithms suc...
Yi Lu, Shiyong Lu, Farshad Fotouhi, Youping Deng, ...
TSMC
2008
136views more  TSMC 2008»
13 years 11 months ago
Learning Relational Descriptions of Differentially Expressed Gene Groups
Abstract-- This paper presents a method that uses gene ontologies, together with the paradigm of relational subgroup discovery, to find compactly described groups of genes differen...
Igor Trajkovski, Filip Zelezný, Nada Lavrac...
JBI
2007
138views Bioinformatics» more  JBI 2007»
13 years 11 months ago
Towards knowledge-based gene expression data mining
ct 10 The field of gene expression data analysis has grown in the past few years from being purely data-centric to integrative, aiming at 11 complementing microarray analysis with...
Riccardo Bellazzi, Blaz Zupan