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    JCB
    2008
    82views more  JCB 2008»
    Determining Nucleolar Association from Sequence by Leveraging Protein-Protein Interactions
    13 years 11 months ago
    Determining Nucleolar Association from Sequence by Leveraging Protein-Protein Interactions
    Download  archive.itee.uq.edu.au
    Controlled intra-nuclear organisation of proteins is critical for sustaining correct function of the cell. Proteins and RNA are transported by passive diffusion and associate with...
    Mikael Bodén, Rohan D. Teasdale
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    JCB
    2008
    111views more  JCB 2008»
    Sorting Genomes with Centromeres by Translocations
    14 years 2 days ago
    Sorting Genomes with Centromeres by Translocations
    Download  acgt.cs.tau.ac.il
    A centromere is a special region in the chromosome that plays a vital role during cell division. Every new chromosome created by a genome rearrangement event must have a centromer...
    Michal Ozery-Flato, Ron Shamir
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    JCB
    2006
    215views more  JCB 2006»
    Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)
    14 years 16 days ago
    Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)
    Download  www.cs.cmu.edu
    Protein fold recognition is an important step towards understanding protein three-dimensional structures and their functions. A conditional graphical model, i.e., segmentation con...
    Yan Liu 0002, Jaime G. Carbonell, Peter Weigele, V...
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    JCB
    2006
    129views more  JCB 2006»
    GenRate: A Generative Model that Reveals Novel Transcripts in Genome-Tiling Microarray Data
    14 years 16 days ago
    GenRate: A Generative Model that Reveals Novel Transcripts in Genome-Tiling Microarray Data
    Download  www.psi.toronto.edu
    Genome-wide microarray designs containing millions to hundreds of millions of probes are available for a variety of mammals, including mouse and human. These genome tiling arrays ...
    Brendan J. Frey, Quaid Morris, Timothy R. Hughes
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    JCB
    2006
    83views more  JCB 2006»
    Detecting Conserved Interaction Patterns in Biological Networks
    14 years 16 days ago
    Detecting Conserved Interaction Patterns in Biological Networks
    Download  www.cs.purdue.edu
    Mehmet Koyutürk, Yohan Kim, Shankar Subramani...
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    JCB
    2006
    129views more  JCB 2006»
    Towards an Integrated Protein-Protein Interaction Network: A Relational Markov Network Approach
    14 years 16 days ago
    Towards an Integrated Protein-Protein Interaction Network: A Relational Markov Network Approach
    Download  pluto.huji.ac.il
    Protein
    Ariel Jaimovich, Gal Elidan, Hanah Margalit, Nir F...
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    JCB
    2006
    91views more  JCB 2006»
    Reverse Engineering Discrete Dynamical Systems from Data Sets with Random Input Vectors
    14 years 16 days ago
    Reverse Engineering Discrete Dynamical Systems from Data Sets with Random Input Vectors
    Download  mbi.osu.edu
    Recently a new algorithm for reverse engineering of biochemical networks was developed by Laubenbacher and Stigler. It is based on methods from computational algebra and finds mos...
    Winfried Just
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    JCB
    2006
    82views more  JCB 2006»
    Protein Multiple Alignment Incorporating Primary and Secondary Structure Information
    14 years 16 days ago
    Protein Multiple Alignment Incorporating Primary and Secondary Structure Information
    Download  www.stat.purdue.edu
    Nak-Kyeong Kim, Jun Xie
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    JCB
    2006
    79views more  JCB 2006»
    A Stability Boundary Based Method for Finding Saddle Points on Potential Energy Surfaces
    14 years 16 days ago
    A Stability Boundary Based Method for Finding Saddle Points on Potential Energy Surfaces
    Download  www.cs.wayne.edu
    The task of finding saddle points on potential energy surfaces plays a crucial role in understanding the dynamics of a micromolecule as well as in studying the folding pathways of...
    Chandan K. Reddy, Hsiao-Dong Chiang
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    JCB
    2006
    126views more  JCB 2006»
    Combinatorics of Saturated Secondary Structures of RNA
    14 years 16 days ago
    Combinatorics of Saturated Secondary Structures of RNA
    Download  clavius.bc.edu
    Following Zuker (1986), a saturated secondary structure for a given RNA sequence is a secondary structure such that no base pair can be added without violating the definition of s...
    P. Clote
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