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    JCB
    2006
    71views more  JCB 2006»
    Multiple Testing Methods For ChIP - Chip High Density Oligonucleotide Array Data
    13 years 11 months ago
    Multiple Testing Methods For ChIP - Chip High Density Oligonucleotide Array Data
    Download  www.stat.berkeley.edu
    Sündüz Keles, Mark J. van der Laan, Sand...
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    JCB
    2006
    185views more  JCB 2006»
    Identification of Amino Acid Latent Periodicity within 94 Protein Families
    13 years 11 months ago
    Identification of Amino Acid Latent Periodicity within 94 Protein Families
    Download  bioinf.narod.ru
    Here, we have applied information decomposition, cyclic profile alignment, and noise decomposition techniques to search for latent repeats within protein families of various funct...
    Vera P. Turutina, Andrew A. Laskin, Nikolay A. Kud...
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    JCB
    2006
    107views more  JCB 2006»
    Maximum Likelihood Molecular Clock Comb: Analytic Solutions
    13 years 11 months ago
    Maximum Likelihood Molecular Clock Comb: Analytic Solutions
    Download  research.haifa.ac.il
    Maximum likelihood (ML) is increasingly used as an optimality criterion for selecting evolutionary trees, but finding the global optimum is a hard computational task. Because no g...
    Benny Chor, Amit Khetan, Sagi Snir
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    JCB
    2006
    66views more  JCB 2006»
    Pairwise Alignment of Protein Interaction Networks
    13 years 11 months ago
    Pairwise Alignment of Protein Interaction Networks
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    With an ever-increasing amount of available data on protein
    Mehmet Koyutürk, Yohan Kim, Umut Topkara, Sha...
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    JCB
    2006
    76views more  JCB 2006»
    An Optimal Algorithm for Perfect Phylogeny Haplotyping
    13 years 11 months ago
    An Optimal Algorithm for Perfect Phylogeny Haplotyping
    Download  vlsi.cs.ucf.edu
    Ravi Vijaya Satya, Amar Mukherjee
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    JCB
    2006
    67views more  JCB 2006»
    The Identifiability of Tree Topology for Phylogenetic Models, Including Covarion and Mixture Models
    13 years 11 months ago
    The Identifiability of Tree Topology for Phylogenetic Models, Including Covarion and Mixture Models
    Download  www.dms.uaf.edu
    For a model of molecular evolution to be useful for phylogenetic inference, the topology of evolutionary trees must be identifiable. That is, from a joint distribution the model p...
    Elizabeth S. Allman, John A. Rhodes
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    JCB
    2006
    144views more  JCB 2006»
    Modeling Virus Self-Assembly Pathways: Avoiding Dynamics Using Geometric Constraint Decomposition
    13 years 11 months ago
    Modeling Virus Self-Assembly Pathways: Avoiding Dynamics Using Geometric Constraint Decomposition
    Download  www.cise.ufl.edu
    We develop a model for elucidating the assembly pathways by which an icosahedral viral shell forms from 60 identical constituent protein monomers. This poorly understood process a...
    Meera Sitharam, Mavis Agbandje-Mckenna
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    JCB
    2006
    83views more  JCB 2006»
    A Discrete-Event Approach to Transcription Control with Dynamic Event-Controllability
    13 years 11 months ago
    A Discrete-Event Approach to Transcription Control with Dynamic Event-Controllability
    Download  guppy.mpe.nus.edu.sg
    This paper presents a discrete-event approach to synthesis of transcription control for a class of (computational) gene networks. Given a set of genes and protein-gene and/or prote...
    Peter C. Y. Chen
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    JCB
    2006
    114views more  JCB 2006»
    A General Modeling Strategy for Gene Regulatory Networks with Stochastic Dynamics
    13 years 11 months ago
    A General Modeling Strategy for Gene Regulatory Networks with Stochastic Dynamics
    Download  www.cs.tut.fi
    A stochastic genetic toggle switch model that consists of two identical, mutually repressive genes is built using the Gillespie algorithm with time delays as an example of a simpl...
    Andre Ribeiro, Rui Zhu, Stuart A. Kauffman
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    JCB
    2006
    185views more  JCB 2006»
    Bayesian Sequential Inference for Stochastic Kinetic Biochemical Network Models
    13 years 11 months ago
    Bayesian Sequential Inference for Stochastic Kinetic Biochemical Network Models
    Download  www.mas.ncl.ac.uk
    As postgenomic biology becomes more predictive, the ability to infer rate parameters of genetic and biochemical networks will become increasingly important. In this paper, we expl...
    Andrew Golightly, Darren J. Wilkinson
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