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    JCB
    2006
    97views more  JCB 2006»
    Wavelet Analysis of DNA Walks
    13 years 11 months ago
    Wavelet Analysis of DNA Walks
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    A wavelet transform of the DNA "walk" constructed from a genomic sequence offers a direct visualization of short and long-range patterns in nucleotide sequences. We stud...
    Adrian D. Haimovich, Bruce Byrne, Ramakrishna Rama...
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    JCB
    2006
    115views more  JCB 2006»
    Designing an A* Algorithm for Calculating Edit Distance between Rooted-Unordered Trees
    13 years 11 months ago
    Designing an A* Algorithm for Calculating Edit Distance between Rooted-Unordered Trees
    Download  www.weizmann.ac.il
    Tree structures are useful for describing and analyzing biological objects and processes. Consequently, there is a need to design metrics and algorithms to compare trees. A natura...
    Yair Horesh, Ramit Mehr, Ron Unger
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    JCB
    2006
    107views more  JCB 2006»
    Protein Image Alignment via Piecewise Affine Transformations
    13 years 11 months ago
    Protein Image Alignment via Piecewise Affine Transformations
    Download  www.math.umbc.edu
    Abstract We present a new approach for aligning families of 2D gels. Instead of choosing one of the gels as reference and performing pairwise alignment, we construct an ideal gel t...
    Florian A. Potra, Xing Liu, Françoise Seill...
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    JCB
    2006
    185views more  JCB 2006»
    A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks
    13 years 11 months ago
    A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks
    Download  www.math.tau.ac.il
    Biological systems are traditionally studied by focusing on a specific subsystem, building an intuitive model for it, and refining the model using results from carefully designed ...
    Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...
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    JCB
    2006
    124views more  JCB 2006»
    The Average Common Substring Approach to Phylogenomic Reconstruction
    13 years 11 months ago
    The Average Common Substring Approach to Phylogenomic Reconstruction
    Download  www.cs.tau.ac.il
    We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
    Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...
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    JCB
    2006
    84views more  JCB 2006»
    Optimal Sum-of-Pairs Multiple Sequence Alignment Using Incremental Carrillo and Lipman Bounds
    13 years 11 months ago
    Optimal Sum-of-Pairs Multiple Sequence Alignment Using Incremental Carrillo and Lipman Bounds
    Download  ww2.cs.mu.oz.au
    Arun Siddharth Konagurthu, Peter J. Stuckey
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    JCB
    2006
    125views more  JCB 2006»
    Hypothesis Generation in Signaling Networks
    13 years 11 months ago
    Hypothesis Generation in Signaling Networks
    Download  bioinfo.cs.rice.edu
    Biological signaling networks comprise the chemical processes by which cells detect and respond to changes in their environment. Such networks have been implicated in the regulati...
    Derek A. Ruths, Luay Nakhleh, M. Sriram Iyengar, S...
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    JCB
    2006
    140views more  JCB 2006»
    HAPLOFREQ-Estimating Haplotype Frequencies Efficiently
    13 years 11 months ago
    HAPLOFREQ-Estimating Haplotype Frequencies Efficiently
    Download  www.cs.princeton.edu
    A commonly used tool in disease association studies is the search for discrepancies between the haplotype distribution in the case and control populations. In order to find this d...
    Eran Halperin, Elad Hazan
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    JCB
    2006
    82views more  JCB 2006»
    Approximating Subtree Distances Between Phylogenies
    13 years 11 months ago
    Approximating Subtree Distances Between Phylogenies
    Download  www.cs.ucdavis.edu
    Maria Luisa Bonet, Katherine St. John, Ruchi Mahin...
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    JCB
    2006
    83views more  JCB 2006»
    Genome-Wide Tagging SNPs with Entropy-Based Monte Carlo Method
    13 years 11 months ago
    Genome-Wide Tagging SNPs with Entropy-Based Monte Carlo Method
    Download  www.umgcc.org
    Zhenqiu Liu, Shili Lin, Ming Tan
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