JCB 2006 | Sciweavers

19

JCB
2006

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13 years 7 months ago

A wavelet transform of the DNA "walk" constructed from a genomic sequence offers a direct visualization of short and long-range patterns in nucleotide sequences. We stud...

Adrian D. Haimovich, Bruce Byrne, Ramakrishna Rama...

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JCB
2006

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Designing an A* Algorithm for Calculating Edit Distance between Rooted-Unordered Trees

13 years 7 months ago

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Tree structures are useful for describing and analyzing biological objects and processes. Consequently, there is a need to design metrics and algorithms to compare trees. A natura...

Yair Horesh, Ramit Mehr, Ron Unger

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16

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JCB
2006

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Protein Image Alignment via Piecewise Affine Transformations

13 years 7 months ago

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Abstract We present a new approach for aligning families of 2D gels. Instead of choosing one of the gels as reference and performing pairwise alignment, we construct an ideal gel t...

Florian A. Potra, Xing Liu, Françoise Seill...

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25

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JCB
2006

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A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks

13 years 7 months ago

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Biological systems are traditionally studied by focusing on a specific subsystem, building an intuitive model for it, and refining the model using results from carefully designed ...

Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...

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24

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JCB
2006

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The Average Common Substring Approach to Phylogenomic Reconstruction

13 years 7 months ago

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We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...

Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...

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15

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JCB
2006

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Optimal Sum-of-Pairs Multiple Sequence Alignment Using Incremental Carrillo and Lipman Bounds

13 years 7 months ago

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Arun Siddharth Konagurthu, Peter J. Stuckey

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26

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JCB
2006

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Hypothesis Generation in Signaling Networks

13 years 7 months ago

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Biological signaling networks comprise the chemical processes by which cells detect and respond to changes in their environment. Such networks have been implicated in the regulati...

Derek A. Ruths, Luay Nakhleh, M. Sriram Iyengar, S...

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23

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JCB
2006

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HAPLOFREQ-Estimating Haplotype Frequencies Efficiently

13 years 7 months ago

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A commonly used tool in disease association studies is the search for discrepancies between the haplotype distribution in the case and control populations. In order to find this d...

Eran Halperin, Elad Hazan

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16

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JCB
2006

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Approximating Subtree Distances Between Phylogenies

13 years 7 months ago

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Maria Luisa Bonet, Katherine St. John, Ruchi Mahin...

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