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    JCB
    2007
    118views more  JCB 2007»
    Discovering Topological Motifs Using a Compact Notation
    14 years 19 days ago
    Discovering Topological Motifs Using a Compact Notation
    Download  www.cs.gsu.edu
    Discovering topological motifs or common topologies in one or more graphs is an important as well as an interesting problem. It had been classically viewed as the subgraph isomorp...
    Laxmi Parida
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    JCB
    2007
    99views more  JCB 2007»
    Duplication and Inversion History of a Tandemly Repeated Genes Family
    14 years 19 days ago
    Duplication and Inversion History of a Tandemly Repeated Genes Family
    Download  www.iro.umontreal.ca
    Given a phylogenetic tree for a family of tandemly repeated genes and their signed order on the chromosome, we aim to find the minimum number of inversions compatible with an evo...
    Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk, ...
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    JCB
    2007
    74views more  JCB 2007»
    A Decomposition Theory for Phylogenetic Networks and Incompatible Characters
    14 years 19 days ago
    A Decomposition Theory for Phylogenetic Networks and Incompatible Characters
    Download  www.eecs.berkeley.edu
    Dan Gusfield, Vikas Bansal, Vineet Bafna, Yun S. S...
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    JCB
    2007
    145views more  JCB 2007»
    Confounding Factors in HGT Detection: Statistical Error, Coalescent Effects, and Multiple Solutions
    14 years 19 days ago
    Confounding Factors in HGT Detection: Statistical Error, Coalescent Effects, and Multiple Solutions
    Download  bioinfo.cs.rice.edu
    Prokaryotic organisms share genetic material across species boundaries by means of a process known as horizontal gene transfer (HGT). This process has great significance for unde...
    Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nak...
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    JCB
    2007
    74views more  JCB 2007»
    Efficient Constructions of Disjunct Matrices with Applications to DNA Library Screening
    14 years 19 days ago
    Efficient Constructions of Disjunct Matrices with Applications to DNA Library Screening
    Download  jupiter.math.nctu.edu.tw
    Yongxi Cheng, Ding-Zhu Du
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    JCB
    2007
    81views more  JCB 2007»
    Exact and Heuristic Algorithms for the Indel Maximum Likelihood Problem
    14 years 19 days ago
    Exact and Heuristic Algorithms for the Indel Maximum Likelihood Problem
    Download  www.labunix.uqam.ca
    Abdoulaye Baniré Diallo, Vladimir Makarenko...
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    JCB
    2007
    146views more  JCB 2007»
    MSOAR: A High-Throughput Ortholog Assignment System Based on Genome Rearrangement
    14 years 19 days ago
    MSOAR: A High-Throughput Ortholog Assignment System Based on Genome Rearrangement
    Download  www1.spms.ntu.edu.sg
    The assignment of orthologous genes between a pair of genomes is a fundamental and challenging problem in comparative genomics, since many computational methods for solving variou...
    Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang...
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    JCB
    2007
    94views more  JCB 2007»
    A Quantile Method for Sizing Optical Maps
    14 years 19 days ago
    A Quantile Method for Sizing Optical Maps
    Download  www.cmb.usc.edu
    Optical mapping is an integrated system for the analysis of single DNA molecules. It constructs restriction maps (noted as “optical map”) from individual DNA molecules present...
    Haifeng Li, Anton Valouev, David C. Schwartz, Mich...
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    JCB
    2007
    83views more  JCB 2007»
    Evolutionary Networks in the Formatted Protein Sequence Space
    14 years 19 days ago
    Evolutionary Networks in the Formatted Protein Sequence Space
    Download  leah.haifa.ac.il
    In our recent work, a new approach to establish sequence relatedness, by walking through the protein sequence space, was introduced. The sequence space is built from 20 amino acid...
    Zakharia M. Frenkel, Edward N. Trifonov
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    JCB
    2007
    104views more  JCB 2007»
    Counting Coalescent Histories
    14 years 19 days ago
    Counting Coalescent Histories
    Download  rosenberglab.bioinformatics.med.umich.edu
    Given a species tree and a gene tree, a valid coalescent history is a list of the branches of the species tree on which coalescences in the gene tree take place. I develop a recur...
    Noah A. Rosenberg
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