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    JCB
    2007
    58views more  JCB 2007»
    Gene Maps Linearization Using Genomic Rearrangement Distances
    13 years 11 months ago
    Gene Maps Linearization Using Genomic Rearrangement Distances
    Download  igm.univ-mlv.fr
    Guillaume Blin, Eric Blais, Danny Hermelin, Pierre...
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    JCB
    2007
    51views more  JCB 2007»
    Reconstruction of Ancestral Genomic Sequences Using Likelihood
    13 years 11 months ago
    Reconstruction of Ancestral Genomic Sequences Using Likelihood
    Download  www.nada.kth.se
    Isaac Elias, Tamir Tuller
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    JCB
    2007
    78views more  JCB 2007»
    Sorting by Reciprocal Translocations via Reversals Theory
    13 years 11 months ago
    Sorting by Reciprocal Translocations via Reversals Theory
    Download  acgt.cs.tau.ac.il
    The understanding of genome rearrangements is an important endeavor in comparative genomics. A major computational problem in this field is finding a shortest sequence of genome...
    Michal Ozery-Flato, Ron Shamir
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    JCB
    2007
    136views more  JCB 2007»
    A Structure-Based Flexible Search Method for Motifs in RNA
    13 years 11 months ago
    A Structure-Based Flexible Search Method for Motifs in RNA
    Download  www.cs.bgu.ac.il
    The discovery of non-coding RNA (ncRNA) motifs and their role in regulating gene expression has recently attracted considerable attention. The goal is to discover these motifs in ...
    Isana Veksler-Lublinsky, Michal Ziv-Ukelson, Danny...
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    JCB
    2007
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    Neighbor Joining Algorithms for Inferring Phylogenies via LCA Distances
    13 years 11 months ago
    Neighbor Joining Algorithms for Inferring Phylogenies via LCA Distances
    Download  www.cs.technion.ac.il
    Reconstructing phylogenetic trees efficiently and accurately from distance estimates is an ongoing challenge in computational biology from both practical and theoretical consider...
    Ilan Gronau, Shlomo Moran
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    JCB
    2007
    62views more  JCB 2007»
    Improved Covariance Matrix Estimators for Weighted Analysis of Microarray Data
    13 years 11 months ago
    Improved Covariance Matrix Estimators for Weighted Analysis of Microarray Data
    Download  www.math.chalmers.se
    Magnus Åstrand, Petter Mostad, Mats Rudemo
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    JCB
    2007
    108views more  JCB 2007»
    A Dynamic Programming Approach for Finding Common Patterns in RNAs
    13 years 11 months ago
    A Dynamic Programming Approach for Finding Common Patterns in RNAs
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    We developed a dynamic programming approach of computing common sequence structure patterns among two RNAs given their primary sequences and their secondary structures. Common pat...
    Sven Siebert, Rolf Backofen
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    JCB
    2007
    70views more  JCB 2007»
    Phylogeny of Mixture Models: Robustness of Maximum Likelihood and Non-Identifiable Distributions
    13 years 11 months ago
    Phylogeny of Mixture Models: Robustness of Maximum Likelihood and Non-Identifiable Distributions
    Download  www.cs.rochester.edu
    Daniel Stefankovic, Eric Vigoda
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    JCB
    2007
    130views more  JCB 2007»
    Bayesian Inference of MicroRNA Targets from Sequence and Expression Data
    13 years 11 months ago
    Bayesian Inference of MicroRNA Targets from Sequence and Expression Data
    Download  morrislab.med.utoronto.ca
    MicroRNAs (miRNAs) regulate a large proportion of mammalian genes by hybridizing to targeted messenger RNAs (mRNAs) and down-regulating their translation into protein. Although mu...
    Jim C. Huang, Quaid Morris, Brendan J. Frey
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    JCB
    2007
    94views more  JCB 2007»
    Domain Architecture Comparison for Multidomain Homology Identification
    13 years 11 months ago
    Domain Architecture Comparison for Multidomain Homology Identification
    Download  www-2.cs.cmu.edu
    Nan Song, R. D. Sedgewick, Dannie Durand
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