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    BMCBI
    2010
    151views more  BMCBI 2010»
    BABAR: an R package to simplify the normalisation of common reference design microarray-based transcriptomic datasets
    13 years 8 months ago
    BABAR: an R package to simplify the normalisation of common reference design microarray-based transcriptomic datasets
    Download  www.biomedcentral.com
    Background: The development of DNA microarrays has facilitated the generation of hundreds of thousands of transcriptomic datasets. The use of a common reference microarray design ...
    Mark J. Alston, John Seers, Jay C. D. Hinton, Sach...
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    BIOINFORMATICS
    2007
    66views more  BIOINFORMATICS 2007»
    Gene expression network analysis and applications to immunology
    13 years 8 months ago
    Gene expression network analysis and applications to immunology
    Download  www-stat.stanford.edu
    We address the problem of using expression data and prior biological knowledge to identify differentially expressed pathways or groups of genes. Following an idea of Ideker et al...
    Serban Nacu, Rebecca Critchley-Thorne, Peter Lee, ...
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    BIOCOMP
    2009
    171views Bioinformatics» more  BIOCOMP 2009»
    Inferring Gene Regulatory Networks from Asynchronous Microarray Data
    13 years 9 months ago
    Inferring Gene Regulatory Networks from Asynchronous Microarray Data
    Download  dna.cs.byu.edu
    Modern approaches to treating genetic disorders, cancers and even epidemics rely on a detailed understanding of the underlying gene signaling network. Previous work has used time s...
    David Oviatt, Mark J. Clement, Quinn Snell, Kennet...
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    METMBS
    2003
    165views Mathematics» more  METMBS 2003»
    GeneBox: Interactive Visualization of Microarray Data Sets
    13 years 10 months ago
    GeneBox: Interactive Visualization of Microarray Data Sets
    Download  www.cs.ucdavis.edu
    Abstract Technological advancements are constantly increasing the size and complexity of data resulting from microarray experiments. This fact has led biologists to ask complex que...
    Nameeta Shah, Vladimir Filkov, Bernd Hamann, Kenne...
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    PSB
    2004
    87views Applied Computing» more  PSB 2004»
    Modeling Cellular Processes with Variational Bayesian Cooperative Vector Quantizer
    13 years 10 months ago
    Modeling Cellular Processes with Variational Bayesian Cooperative Vector Quantizer
    Download  www.cs.pitt.edu
    Gene expression of a cell is controlled by sophisticated cellular processes. The capability of inferring the states of these cellular processes would provide insight into the mech...
    Xinghua Lu, Milos Hauskrecht, Roger S. Day
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    BIOCOMP
    2006
    92views Bioinformatics» more  BIOCOMP 2006»
    Needs Assessment for Scientific Visualization of Multivariate, High-Dimensional Microarray Data
    13 years 10 months ago
    Needs Assessment for Scientific Visualization of Multivariate, High-Dimensional Microarray Data
    Download  ww1.ucmss.com
    Vetria Byrd, Tarynn Witten
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    APBC
    2004
    138views Bioinformatics» more  APBC 2004»
    Whole-Genome Functional Classification of Genes by Latent Semantic Analysis on Microarray Data
    13 years 10 months ago
    Whole-Genome Functional Classification of Genes by Latent Semantic Analysis on Microarray Data
    Download  crpit.com
    Quantitative simultaneous monitoring of the expression levels of thousands of genes under various experimental conditions is now possible using microarray experiments. The resulti...
    See-Kiong Ng, Zexuan Zhu, Yew-Soon Ong
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    CATA
    2008
    136views Computer Science» more  CATA 2008»
    Investigation of Random Forest Performance with Cancer Microarray Data
    13 years 10 months ago
    Investigation of Random Forest Performance with Cancer Microarray Data
    Download  public.clunet.edu
    The diagnosis of cancer type based on microarray data offers hope that cancer classification can be highly accurate for clinicians to choose the most appropriate forms of treatmen...
    Myungsook Klassen, Matt Cummings, Griselda Saldana
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    ECML
    2006
    Springer
    89views Machine Learning» more  ECML 2006»
    Evaluating Feature Selection for SVMs in High Dimensions
    14 years 6 days ago
    Evaluating Feature Selection for SVMs in High Dimensions
    Download  www.ida.liu.se
    We perform a systematic evaluation of feature selection (FS) methods for support vector machines (SVMs) using simulated high-dimensional data (up to 5000 dimensions). Several findi...
    Roland Nilsson, José M. Peña, Johan ...
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    AUSAI
    2007
    Springer
    176views Artificial Intelligence» more  AUSAI 2007»
    Building Classification Models from Microarray Data with Tree-Based Classification Algorithms
    14 years 16 days ago
    Building Classification Models from Microarray Data with Tree-Based Classification Algorithms
    Download  www.csse.monash.edu.au
    Building classification models plays an important role in DNA mircroarray data analyses. An essential feature of DNA microarray data sets is that the number of input variables (gen...
    Peter J. Tan, David L. Dowe, Trevor I. Dix
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