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    NAR
    2007
    62views more  NAR 2007»
    MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
    13 years 11 months ago
    MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
    Download  kinemage.biochem.duke.edu
    MolProbity is a general-purpose web server offering quality validation for 3D structures of proteins, nucleic acids and complexes. It provides detailed all-atom contact analysis o...
    Ian W. Davis, Andrew Leaver-Fay, Vincent B. Chen, ...
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    NAR
    2007
    96views more  NAR 2007»
    DOMAC: an accurate, hybrid protein domain prediction server
    13 years 11 months ago
    DOMAC: an accurate, hybrid protein domain prediction server
    Download  www.cs.missouri.edu
    Protein domain prediction is important for protein structure prediction, structure determination, function annotation, mutagenesis analysis and protein engineering. Here we descri...
    Jianlin Cheng
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    NAR
    2007
    152views more  NAR 2007»
    COMPASS server for remote homology inference
    13 years 11 months ago
    COMPASS server for remote homology inference
    Download  prodata.swmed.edu
    COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles f...
    Ruslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V....
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    NAR
    2007
    116views more  NAR 2007»
    Protein knot server: detection of knots in protein structures
    13 years 11 months ago
    Protein knot server: detection of knots in protein structures
    Download  www.mit.edu
    KNOTS (http://knots.mit.edu) is a web server that detects knots in protein structures. Several protein structures have been reported to contain intricate knots. The physiological ...
    Grigory Kolesov, Peter Virnau, Mehran Kardar, Leon...
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    NAR
    2007
    124views more  NAR 2007»
    The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures
    13 years 11 months ago
    The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures
    Download  www.incore.at
    Many non-coding RNA genes and cis-acting regulatory elements of mRNAs contain RNA secondary structures that are critical for their function. Such functional RNAs can be predicted ...
    Andreas R. Gruber, Richard Neuböck, Ivo L. Ho...
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    NAR
    2007
    99views more  NAR 2007»
    PATRIC: The VBI PathoSystems Resource Integration Center
    13 years 11 months ago
    PATRIC: The VBI PathoSystems Resource Integration Center
    Download  people.cs.vt.edu
    The PathoSystems Resource Integration Center (PATRIC) is one of eight Bioinformatics Resource Centers (BRCs) funded by the National Institute of Allergy and Infection Diseases (NI...
    E. E. Snyder, N. Kampanya, J. Lu, Eric K. Nordberg...
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    NAR
    2007
    128views more  NAR 2007»
    Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis
    13 years 11 months ago
    Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis
    Download  makana-test.berkeley.edu
    Phylogenomic analysis addresses the limitations of function prediction based on annotation transfer, and has been shown to enable the highest accuracy in prediction of protein mol...
    Jake Gunn Glanville, Dan Kirshner, Nandini Krishna...
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    NAR
    2007
    260views more  NAR 2007»
    WoLF PSORT: protein localization predictor
    13 years 11 months ago
    WoLF PSORT: protein localization predictor
    Download  wolfpsort.org
    WoLF PSORT is an extension of the PSORT II program for protein subcellular location prediction. WoLF PSORT converts protein amino acid sequences into numerical localization featur...
    Paul Horton, Keun-Joon Park, Takeshi Obayashi, Nao...
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    NAR
    2007
    136views more  NAR 2007»
    DBAli tools: mining the protein structure space
    13 years 11 months ago
    DBAli tools: mining the protein structure space
    Download  research.janelia.org
    The DBAli tools use a comprehensive set of structural alignments in the DBAli database to leverage the structural information deposited in the Protein Data Bank (PDB). These tools...
    Marc A. Martí-Renom, Ursula Pieper, Mallur ...
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    NAR
    2007
    95views more  NAR 2007»
    VisANT 3.0: new modules for pathway visualization, editing, prediction and construction
    13 years 11 months ago
    VisANT 3.0: new modules for pathway visualization, editing, prediction and construction
    Download  visant.bu.edu
    With the integration of the KEGG and Predictome databases as well as two search engines for coexpressed genes/proteins using data sets obtained from the Stanford Microarray Databa...
    Zhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan C...
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