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NAR
2007
120views more  NAR 2007»
13 years 11 months ago
TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method
TOPOFIT-DB (T-DB) is a public web-based database of protein structural alignments based on the TOPOFIT method, providing a comprehensive resource for comparative analysis of prote...
Chesley M. Leslin, Alexej Abyzov, Valentin A. Ilyi...
NAR
2007
82views more  NAR 2007»
13 years 11 months ago
Towards pathogenomics: a web-based resource for pathogenicity islands
Pathogenicity islands (PAIs) are genetic elements whose products are essential to the process of disease development. They have been horizontally (laterally) transferred from othe...
Sung Ho Yoon, Young-Kyu Park, Soohyun Lee, Doil Ch...
NAR
2007
132views more  NAR 2007»
13 years 11 months ago
TRED: a transcriptional regulatory element database, new entries and other development
Transcriptional factors (TFs) and many of their target genes are involved in gene regulation at the level of transcription. To decipher gene regulatory networks (GRNs) we require ...
C. Jiang, Zhenyu Xuan, Fang Zhao, Michael Q. Zhang
NAR
2007
113views more  NAR 2007»
13 years 11 months ago
The UCSC genome browser database: update 2007
The University of California, Santa Cruz Genome Browser Database contains, as of September 2006, sequence and annotation data for the genomes of 13 vertebrate and 19 invertebrate ...
Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Hea...
NAR
2007
85views more  NAR 2007»
13 years 11 months ago
The TIGR Rice Genome Annotation Resource: improvements and new features
In The Institute for Genomic Research Rice Genome Annotation project (http://rice.tigr.org), we have continued to update the rice genome sequence with new data and improve the qua...
Shu Ouyang, Wei Zhu, John A. Hamilton Jr., Haining...
NAR
2007
121views more  NAR 2007»
13 years 11 months ago
WormBase: new content and better access
WormBase (http://wormbase.org), a model organism database for Caenorhabditis elegans and other related nematodes, continues to evolve and expand. Over the past year WormBase has a...
Tamberlyn Bieri, Darin Blasiar, Philip Ozersky, Ig...
NAR
2007
72views more  NAR 2007»
13 years 11 months ago
NATsDB: Natural Antisense Transcripts DataBase
Yong Zhang, Jiongtang Li, Lei Kong, Ge Gao, Qing-R...
NAR
2007
150views more  NAR 2007»
13 years 11 months ago
CellCircuits: a database of protein network models
CellCircuits (http://www.cellcircuits.org) is an openaccess database of molecular network models, designed to bridge the gap between databases of individual pairwise molecular int...
H. Craig Mak, Mike Daly, Bianca Gruebel, Trey Idek...
NAR
2007
109views more  NAR 2007»
13 years 11 months ago
GeneTrees: a phylogenomics resource for prokaryotes
The GeneTrees phylogenomics system pursues comparative genomic analyses from the perspective of gene phylogenies for individual genes. The GeneTrees project has the goal of provid...
Yuying Tian, Allan W. Dickerman
NAR
2007
91views more  NAR 2007»
13 years 11 months ago
SuperHapten: a comprehensive database for small immunogenic compounds
The immune system protects organisms from foreign proteins, peptide epitopes and a multitude of chemical compounds. Among these, haptens are small molecules, eliciting an immune r...
Stefan Günther, Dorothea Hempel, Mathias Dunk...