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NAR
2007
132views more  NAR 2007»
13 years 11 months ago
Expanded protein information at SGD: new pages and proteome browser
The recent explosion in protein data generated from both directed small-scale studies and largescale proteomics efforts has greatly expanded the quantity of available protein info...
Robert S. Nash, Shuai Weng, Benjamin C. Hitz, Rama...
NAR
2007
115views more  NAR 2007»
13 years 11 months ago
DroSpeGe: rapid access database for new Drosophila species genomes
The Drosophila species comparative genome database DroSpeGe (http://insects.eugenes.org/ DroSpeGe/) provides genome researchers with rapid, usable access to 12 new and old Drosoph...
Donald G. Gilbert
NAR
2007
90views more  NAR 2007»
13 years 11 months ago
The SUPERFAMILY database in 2007: families and functions
The SUPERFAMILY database provides protein domain assignments, at the SCOP ‘superfamily’ level, for the predicted protein sequences in over 400 completed genomes. A superfamily...
Derek Wilson, Martin Madera, Christine Vogel, Cyru...
NAR
2007
66views more  NAR 2007»
13 years 11 months ago
A Protein Classification Benchmark collection for machine learning
Paolo Sonego, Mircea Pacurar, Somdutta Dhir, Attil...
NAR
2007
81views more  NAR 2007»
13 years 11 months ago
Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation
The Pseudogene.org database serves as a comprehensive repository for pseudogene sequence annotation. The definition of a pseudogene varies within the literature, resulting in sign...
John E. Karro, Yangpan Yan, Deyou Zheng, Zhaolei Z...
NAR
2007
145views more  NAR 2007»
13 years 11 months ago
HMDB: the Human Metabolome Database
The Human Metabolome Database (HMDB) is currently the most complete and comprehensive curated collection of human metabolite and human metabolism data in the world. It contains re...
David S. Wishart, Dan Tzur, Craig Knox, Roman Eisn...
NAR
2007
210views more  NAR 2007»
13 years 11 months ago
MIPSPlantsDB - plant database resource for integrative and comparative plant genome research
Genome-oriented plant research delivers rapidly increasing amount of plant genome data. Comprehensive and structured information resources are required to structure and communicat...
Manuel Spannagl, Octave Noubibou, Dirk Haase, Li Y...
NAR
2007
97views more  NAR 2007»
13 years 11 months ago
Gene Aging Nexus: a web database and data mining platform for microarray data on aging
The recent development of microarray technology provided unprecedented opportunities to understand the genetic basis of aging. So far, many microarray studies have addressed aging...
Fei Pan, Chi-Hsien Chiu, Sudip Pulapura, Michael R...
NAR
2007
65views more  NAR 2007»
13 years 11 months ago
STRING 7 - recent developments in the integration and prediction of protein interactions
Information on protein–protein interactions is still mostly limited to a small number of model organisms, and originates from a wide variety of experimental and computational te...
Christian von Mering, Lars Juhl Jensen, Michael Ku...
NAR
2007
111views more  NAR 2007»
13 years 11 months ago
PEDANT genome database: 10 years online
The PEDANT genome database provides exhaustive annotation of 468 genomes by a broad set of bioinformatics algorithms. We describe recent developments of the PEDANT Web server. The...
M. Louise Riley, Thorsten Schmidt, Irena I. Artamo...