RECOMB
2012
Springer
12 years 1 months ago
2012
Springer
Abstract. Since the first emergence of protein-protein interaction networks, more than a decade ago, they have been viewed as static scaffolds of the signaling-regulatory events ...
KDD
2012
ACM
12 years 1 months ago
2012
ACM
We study a novel clustering problem in which the pairwise relations between objects are categorical. This problem can be viewed as clustering the vertices of a graph whose edges a...
IHI
2012
12 years 7 months ago
2012
Despite recent progress in high-throughput experimental studies, systems level visualization and analysis of large protein interaction networks (ppi) remains a challenging task, g...
SDM
2011
SIAM
13 years 2 months ago
2011
SIAM
We present a model that improves entity entity link modeling in a mixed membership stochastic block model, by jointly modeling links with text about the entities that are linked i...
NAR
2011
13 years 2 months ago
2011
Binary subcomplexes in proteins database (BISC) is a new protein–protein interaction (PPI) database linking up the two communities most active in their characterization: structu...
NAR
2011
13 years 2 months ago
2011
KUPS (The University of Kansas Proteomics Service) provides high-quality protein–protein interaction (PPI) data for researchers developing and evaluating computational models fo...
NAR
2011
13 years 2 months ago
2011
An essential prerequisite for any systems-level understanding of cellular functions is to correctly uncover and annotate all functional interactions among proteins in the cell. To...
NAR
2011
13 years 2 months ago
2011
Chromatin modification (CM) is a set of epigenetic processes that govern many aspects of DNA replication, transcription and repair. CM is carried out by groups of physically inter...
BMCBI
2011
13 years 3 months ago
2011
Background: Graphical models of network associations are useful for both visualizing and integrating multiple types of association data. Identifying modules, or groups of function...
BIOINFORMATICS
2011
13 years 3 months ago
2011
Motivation: Enormous, and constantly increasing quantity of biological information is represented in protein interaction network databases. Most of these data are freely accessibl...