Network querying aims to search a large network for subnetwork regions that are similar to a given query network. In this paper, we propose a novel algorithm for querying large sc...
Currently, a large amount of data can be best represented as graphs, e.g., social networks, protein interaction networks, etc. The analysis of these networks is an urgent research ...
Background: The local connectivity and global position of a protein in a protein interaction network are known to correlate with some of its functional properties, including its e...
Sri R. Paladugu, Shan Zhao, Animesh Ray, Alpan Rav...
d abstract), Nicola Ferraro, Luigi Palopoli, Simona Panni and Simona E. Rombo. Uncovering Hidden Phylogenetic Consensus d abstract), Nicholas Pattengale, Krister Swenson and Bernar...
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simo...
Abstract. Protein function prediction represents a fundamental challenge in bioinformatics. The increasing availability of proteomics network data has enabled the development of se...
We have combined four different types of functional genomic data to create high coverage protein interaction networks for 11 microbes. Our integration algorithm naturally handles s...
Balaji S. Srinivasan, Antal F. Novak, Jason Flanni...
Protein-protein interactions are of great interest to biologists. A variety of high-throughput techniques have been devised, each of which leads to a separate definition of an int...
Christopher Besemann, Anne Denton, Ajay Yekkirala,...
Abstract. Hierarchical clustering is a popular method for grouping together similar elements based on a distance measure between them. In many cases, annotation information for som...
Saket Navlakha, James Robert White, Niranjan Nagar...