BMCBI
2010
13 years 11 months ago
2010
Background: Inference of gene regulatory networks is a key goal in the quest for understanding fundamental cellular processes and revealing underlying relations among genes. With ...
BIBE
2010
IEEE
13 years 11 months ago
2010
IEEE
—Often groups of genes in regulatory networks, also called modules, work collaboratively on similar functions. Mathematically, the modules in a regulatory network has often been ...
BIOCOMP
2006
14 years 7 days ago
2006
Exploring gene regulatory network is a key topic in molecular biology. In this paper, we present a new dynamic Bayesian network (DBN) framework embedded with structural expectatio...
GECCO
2006
Springer
14 years 2 months ago
2006
Springer
In this paper we address the problem of finding gene regulatory networks from experimental DNA microarray data. We focus on the evaluation of the performance of different mathemat...
CMSB
2006
Springer
14 years 2 months ago
2006
Springer
Abstract. This paper presents a method for regulatory network reconstruction from experimental data. We propose a mathematical model for regulatory interactions, based on the work ...
CSB
2003
IEEE
14 years 4 months ago
2003
IEEE
Reverse-engineering of gene networks using linear models often results in an underdetermined system because of excessive unknown parameters. In addition, the practical utility of ...
IDEAL
2004
Springer
14 years 4 months ago
2004
Springer
Building genetic regulatory networks from time series data of gene expression patterns is an important topic in bioinformatics. Probabilistic Boolean networks (PBNs) have been deve...
RECOMB
2005
Springer
14 years 4 months ago
2005
Springer
For studying gene regulatory and protein signaling networks, we have developed an interactive map for the Pseudomonas aeruginosa genome. We first represent genes, proteins and the...
GECCO
2007
Springer
14 years 5 months ago
2007
Springer
We present what we believe is the first attempt to physically reconstruct the exploratory mechanism of genetic regulatory networks. Feedback plays a crucial role during developme...
BMEI
2008
IEEE
14 years 5 months ago
2008
IEEE
Inferring transcriptional regulatory networks from geneexpression data remains a challenging problem, in part because of the noisy nature of the data and the lack of strong networ...