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BMCBI
2004
62views more  BMCBI 2004»
13 years 11 months ago
Pegasys: software for executing and integrating analyses of biological sequences
Background: We present Pegasys
Sohrab P. Shah, David Y. M. He, Jessica N. Sawkins...
BMCBI
2006
166views more  BMCBI 2006»
13 years 11 months ago
bioNMF: a versatile tool for non-negative matrix factorization in biology
Background: In the Bioinformatics field, a great deal of interest has been given to Non-negative matrix factorization technique (NMF), due to its capability of providing new insig...
Alberto D. Pascual-Montano, Pedro Carmona-Saez, Mo...
BIB
2006
141views more  BIB 2006»
13 years 11 months ago
Statistical significance in biological sequence analysis
One of the major goals of computational sequence analysis is to find sequence similarities, which could serve as evidence of structural and functional conservation, as well as of ...
Alexander Yu. Mitrophanov, Mark Borodovsky
ISMB
1997
14 years 11 days ago
SEALS: A System for Easy Analysis of Lots of Sequences
We present a system of programs designed to facilitate sequence analysis projects involving large amounts of data. SEALS (System for Easy Analysis of Lots of Sequences) is a logic...
D. Roland Walker, Eugene V. Koonin
RECOMB
2010
Springer
14 years 24 days ago
Leveraging Sequence Classification by Taxonomy-Based Multitask Learning
In this work we consider an inference task that biologists are very good at: deciphering biological processes by bringing together knowledge that has been obtained by experiments u...
Christian Widmer, Jose Leiva, Yasemin Altun, Gunna...
INFOVIS
2003
IEEE
14 years 4 months ago
BARD: A visualization tool for biological sequence analysis
We present BARD (biological arc diagrams), a visualization tool for biological sequence analysis. The development of BARD began with the application of Wattenberg’s arc diagrams...
Rhazes Spell, Rachael Brady, Fred Dietrich
DILS
2005
Springer
14 years 4 months ago
PLATCOM: Current Status and Plan for the Next Stages
We have been developing a system for comparing multiple genomes, PLATCOM, where users can choose genomes of their choice freely and perform analysis of the selected genomes with a...
Kwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhipi...
AINA
2006
IEEE
14 years 5 months ago
Accelerating the HMMER Sequence Analysis Suite Using Conventional Processors
Due to the ever-increasing size of sequence databases it has become clear that faster techniques must be employed to effectively perform biological sequence analysis in a reasonab...
John Paul Walters, Bashar Qudah, Vipin Chaudhary