BMCBI
2004
13 years 11 months ago
2004
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
BMCBI
2005
13 years 11 months ago
2005
Background: We introduce GASH, a new, publicly accessible program for structural alignment and superposition. Alignments are scored by the Number of Equivalent Residues (NER), a q...
BMCBI
2008
13 years 11 months ago
2008
Background: Protein structural alignment provides a fundamental basis for deriving principles of functional and evolutionary relationships. It is routinely used for structural cla...
BMCBI
2007
13 years 11 months ago
2007
Background: Remote homology detection is a challenging problem in Bioinformatics. Arguably, profile Hidden Markov Models (pHMMs) are one of the most successful approaches in addre...
CSB
2004
IEEE
14 years 3 months ago
2004
IEEE
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
COMPLIFE
2005
Springer
14 years 5 months ago
2005
Springer
During the last few years new functionalities of RNA have been discovered, renewing the need for computational tools for their analysis. To this respect, multiple sequence alignmen...
WABI
2007
Springer
14 years 5 months ago
2007
Springer
Abstract. Protein structural alignment is an indispensable tool used for many different studies in bioinformatics. Most structural alignment algorithms assume that the structural ...
RECOMB
2002
Springer
14 years 11 months ago
2002
Springer