WABI
2010
Springer
13 years 10 months ago
2010
Springer
Background: Although many RNA molecules contain pseudoknots, computational prediction of pseudoknotted RNA structure is still in its infancy due to high running time and space con...
NAR
2007
13 years 11 months ago
2007
We present taveRNA, a web server package that hosts three RNA web services: alteRNA, inteRNA and pRuNA. alteRNA is a new alternative for RNA secondary structure prediction. It is ...
BIOINFORMATICS
2000
13 years 11 months ago
2000
Motivation: Evaluating the accuracy of predicted models is critical for assessing structure prediction methods. Because this problem is not trivial, a large number of different as...
BMCBI
2004
13 years 11 months ago
2004
Background: RNA secondary structure prediction methods based on probabilistic modeling can be developed using stochastic context-free grammars (SCFGs). Such methods can readily co...
ESWA
2007
13 years 11 months ago
2007
Understanding the sequence-to-structure relationship is a central task in bioinformatics research. Adequate knowledge about this relationship can potentially improve accuracy for ...
JCC
2008
13 years 11 months ago
2008
: We introduce PULCHRA, a fast and robust method for the reconstruction of full-atom protein models starting from a reduced protein representation. The algorithm is particularly su...
BMCBI
2007
13 years 11 months ago
2007
Background: 3D-Jury, the structure prediction consensus method publicly available in the Meta Server http://meta.bioinfo.pl/, was evaluated using models gathered in the 7th round ...
BMCBI
2006
13 years 11 months ago
2006
Background: One-dimensional protein structures such as secondary structures or contact numbers are useful for three-dimensional structure prediction and helpful for intuitive unde...
BMCBI
2006
13 years 11 months ago
2006
Background: In recent years protein structure prediction methods using local structure information have shown promising improvements. The quality of new fold predictions has risen...
BMCBI
2008
13 years 11 months ago
2008
Background: Protein structures have conserved features