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BMCBI
2004
84views more  BMCBI 2004»
14 years 9 days ago
Comparison of computational methods for identifying translation initiation sites in EST data
Background: Expressed Sequence Tag (EST) sequences are generally single-strand, single-pass sequences, only 200
Afshin Nadershahi, Scott C. Fahrenkrug, Lynda B. M...
BMCBI
2007
104views more  BMCBI 2007»
14 years 17 days ago
TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets
Background: The nucleotide sequence flanking the translation initiation codon (start codon context) affects the translational efficiency of eukaryotic mRNAs, and may indicate the ...
Renato Vicentini, Marcelo Menossi
BMCBI
2007
147views more  BMCBI 2007»
14 years 17 days ago
Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes
Background: Computational prediction methods are currently used to identify genes in prokaryote genomes. However, identification of the correct translation initiation sites remain...
Yuko Makita, Michiel J. L. de Hoon, Antoine Danchi...
BMCBI
2008
118views more  BMCBI 2008»
14 years 17 days ago
MetWAMer: eukaryotic translation initiation site prediction
Background: Translation initiation site (TIS) identification is an important aspect of the gene annotation process, requisite for the accurate delineation of protein sequences fro...
Michael E. Sparks, Volker Brendel
BMCBI
2010
87views more  BMCBI 2010»
14 years 17 days ago
Prodigal: prokaryotic gene recognition and translation initiation site identification
Background: The quality of automated gene prediction in microbial organisms has improved steadily over the past decade, but there is still room for improvement. Increasing the num...
Doug Hyatt, Gwo-Liang Chen, Philip F. LoCascio, Mi...