TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets

Background: The nucleotide sequence flanking the translation initiation codon (start codon context) affects the translational efficiency of eukaryotic mRNAs, and may indicate the presence of an alternative translation initiation site (TIS) to produce proteins with different properties. Multitargeting may reflect the translational variability of these other protein forms. In this paper we present a web server that performs computations to investigate the usage of alternative translation initiation sites for the synthesis of new protein variants that might have different functions. Results: An efficient web-based tool entitled TISs-ST (Translation Initiation Sites and Secretory Targets) evaluates putative translation initiation sites and indicates the prediction of a signal peptide of the protein encoded from this site. The TISs-ST web server is freely available to both academic and commercial users and can be accessed at http://ipe.cbmeg.unicamp.br/pub/TISs-ST. Conclusion: The program ...

• Type: Journal
• Year: 2007
• Where: BMCBI
• Authors: Renato Vicentini, Marcelo Menossi
• Keywords: Alternative Translation Initiation, BMCBI 2007, Proteins, Translation Initiation Site