FunSpec: a web-based cluster interpreter for yeast

Background: For effective exposition of biological information, especially with regard to analysis of large-scale data types, researchers need immediate access to multiple categorical knowledge bases and need summary information presented to them on collections of genes, as opposed to the typical one gene at a time. Results: We present here a web-based tool (FunSpec) for statistical evaluation of groups of genes and proteins (e.g. co-regulated genes, protein complexes, genetic interactors) with respect to existing annotations (e.g. functional roles, biochemical properties, localization). FunSpec is available online at [http://funspec.med.utoronto.ca] Conclusion: FunSpec is helpful for interpretation of any data type that generates groups of related genes and proteins, such as gene expression clustering and protein complexes, and is useful for predictive methods employing "guilt-by-association." Background A large proportion of the online resources compiling information about...

• Type: Journal
• Year: 2002
• Where: BMCBI
• Authors: Mark D. Robinson, Jörg Grigull, Naveed Mohammad, Timothy R. Hughes
• Keywords: BMCBI 2002, Data Types, Large-scale Data Types, Protein