NAR 2016 - PDF Preprint Papers

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NAR
2016

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dbSUPER: a database of super-enhancers in mouse and human genome

8 years 8 months ago

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Super-enhancers are the clusters of transcriptional enhancers that can drive cell-type-specific gene expression and also crucial in cell identity. Many disease-associated sequence...

Aziz Khan, Xuegong Zhang

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Id	Views	Title	Status

1	70	dbSUPER: a database of super-enhancers in mouse and human genome	claim
2	63	InterRNA: a database of base interactions in RNA structures	claim
3	63	FLOR-ID: an interactive database of flowering-time gene networks in Arabidopsis thaliana	claim
4	63	KEGG as a reference resource for gene and protein annotation	claim
5	63	rVarBase: an updated database for regulatory features of human variants	claim
6	51	BacDive - The Bacterial Diversity Metadatabase in 2016	claim
7	49	CauloBrowser: A systems biology resource for Caulobacter crescentus	claim
8	48	piRNA cluster database: a web resource for piRNA producing loci	claim
9	48	HaploReg v4: systematic mining of putative causal variants, cell types, regulators and target genes for human complex traits and disease	claim
10	47	ccmGDB: a database for cancer cell metabolism genes	claim
11	46	SigMol: repertoire of quorum sensing signaling molecules in prokaryotes	claim
12	45	MutationAligner: a resource of recurrent mutation hotspots in protein domains in cancer	claim
13	43	Ensembl Genomes 2016: more genomes, more complexity	claim
14	43	WormBase 2016: expanding to enable helminth genomic research	claim
15	43	miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database	claim
16	42	PlantDHS: a database for DNase I hypersensitive sites in plants	claim
17	42	APD3: the antimicrobial peptide database as a tool for research and education	claim
18	41	BindingDB in 2015: A public database for medicinal chemistry, computational chemistry and systems pharmacology	claim
19	41	MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins	claim
20	40	JuncDB: an exon-exon junction database	claim
21	40	The Dfam database of repetitive DNA families	claim
22	39	hPSCreg - the human pluripotent stem cell registry	claim
23	39	The Reactome pathway Knowledgebase	claim
24	39	BacWGSTdb, a database for genotyping and source tracking bacterial pathogens	claim
25	38	Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts	claim
26	38	PhytoPath: an integrative resource for plant pathogen genomics	claim
27	38	GEneSTATION 1.0: a synthetic resource of diverse evolutionary and functional genomic data for studying the evolution of pregnancy-associated tissues and phenotypes	claim
28	37	Colorectal cancer atlas: An integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tissues	claim
29	37	Gramene 2016: comparative plant genomics and pathway resources	claim
30	37	MERAV: a tool for comparing gene expression across human tissues and cell types	claim
31	36	PGSB PlantsDB: updates to the database framework for comparative plant genome research	claim
32	36	DriverDBv2: a database for human cancer driver gene research	claim
33	35	The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases	claim
34	34	MaizeGDB update: new tools, data and interface for the maize model organism database	claim
35	33	KLIFS: a structural kinase-ligand interaction database	claim

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