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» A Database Platform for Bioinformatics
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BMCBI
2007
181views more  BMCBI 2007»
13 years 9 months ago
Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases
Background: In recent years, mammalian protein-protein interaction network databases have been developed. The interactions in these databases are either extracted manually from lo...
Seth I. Berger, Jeremy M. Posner, Avi Ma'ayan
NAR
2010
173views more  NAR 2010»
13 years 3 months ago
The Protein Naming Utility: a rules database for protein nomenclature
Generation of syntactically correct and unambiguous names for proteins is a challenging, yet vital task for functional annotation processes. Proteins are often named based on homo...
Johannes Goll, Robert Montgomery, Lauren M. Brinka...
WWW
2007
ACM
14 years 9 months ago
SPARQ2L: towards support for subgraph extraction queries in rdf databases
Many applications in analytical domains often have the need to "connect the dots" i.e., query about the structure of data. In bioinformatics for example, it is typical t...
Kemafor Anyanwu, Angela Maduko, Amit P. Sheth
BMCBI
2008
158views more  BMCBI 2008»
13 years 9 months ago
Discovering gene annotations in biomedical text databases
Currently, most of the discovered biological and biomedical knowledge is available as textual data in scientific papers. And, locating and curating information about a genomic enti...
Ali Cakmak, Gultekin Özsoyoglu
BMCBI
2007
95views more  BMCBI 2007»
13 years 9 months ago
Methods for estimating human endogenous retrovirus activities from EST databases
Background: Human endogenous retroviruses (HERVs) are surviving traces of ancient retrovirus infections and now reside within the human DNA. Recently HERV expression has been dete...
Merja Oja, Jaakko Peltonen, Jonas Blomberg, Samuel...