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» A Dynamic Theory of Ontology
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BIBE
2006
IEEE
184views Bioinformatics» more  BIBE 2006»
14 years 4 months ago
A Language Modeling Text Mining Approach to the Annotation of Protein Community
This paper discusses an ontology based language modeling text mining approach to the annotation of protein community. Communities appear to play an important role in the functional...
Xiaodan Zhang, Daniel Duanqing Wu, Xiaohua Zhou, X...
STOC
2004
ACM
121views Algorithms» more  STOC 2004»
14 years 10 months ago
Lower bounds for dynamic connectivity
We prove an (lg n) cell-probe lower bound on maintaining connectivity in dynamic graphs, as well as a more general trade-off between updates and queries. Our bound holds even if t...
Mihai Patrascu, Erik D. Demaine
STOC
2010
ACM
211views Algorithms» more  STOC 2010»
14 years 3 months ago
Distributed Computation in Dynamic Networks
In this paper we investigate distributed computation in dynamic networks in which the network topology changes from round to round. We consider a worst-case model in which the com...
Fabian Kuhn, Nancy Lynch and Rotem Oshman
JCC
2011
87views more  JCC 2011»
13 years 5 months ago
Determining equilibrium constants for dimerization reactions from molecular dynamics simulations
Abstract: With today’s available computer power, free energy calculations from equilibrium molecular dynamics simulations “via counting” become feasible for an increasing num...
Djurre H. De Jong, Lars V. Schäfer, Alex H. D...
BMCBI
2007
179views more  BMCBI 2007»
13 years 10 months ago
Automated smoother for the numerical decoupling of dynamics models
Background: Structure identification of dynamic models for complex biological systems is the cornerstone of their reverse engineering. Biochemical Systems Theory (BST) offers a pa...
Marco Vilela, Carlos Cristiano H. Borges, Susana V...