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» A Gene Network Model for Developing Cell Lineages
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BIOCOMP
2006
13 years 9 months ago
Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM) for Modeling of Gene Network from Time Series Gene
Exploring gene regulatory network is a key topic in molecular biology. In this paper, we present a new dynamic Bayesian network (DBN) framework embedded with structural expectatio...
Yu Zhang, Zhidong Deng, Hongshan Jiang, Peifa Jia
ICCAD
2005
IEEE
81views Hardware» more  ICCAD 2005»
14 years 4 months ago
Kauffman networks: analysis and applications
Abstract— A Kauffman network is an abstract model of gene regulatory networks. Each gene is represented by a vertex. An edge from one vertex to another implies that the former ge...
Elena Dubrova, Maxim Teslenko, Andrés Marti...
IJBRA
2008
66views more  IJBRA 2008»
13 years 7 months ago
Integer programming-based approach to allocation of reporter genes for cell array analysis
Abstract Observing behaviors of protein pathways and genetic networks under various environments in living cells is essential for unraveling disease and developing drugs. For that ...
Morihiro Hayashida, Fuyan Sun, Sachiyo Aburatani, ...
BMCBI
2004
133views more  BMCBI 2004»
13 years 7 months ago
Artificial neural network approach for selection of susceptible single nucleotide polymorphisms and construction of prediction m
Background: Screening of various gene markers such as single nucleotide polymorphism (SNP) and correlation between these markers and development of multifactorial disease have pre...
Yasuyuki Tomita, Shuta Tomida, Yuko Hasegawa, Yoic...
NAR
2010
143views more  NAR 2010»
13 years 2 months ago
WormBase: a comprehensive resource for nematode research
WormBase (http://www.wormbase.org) is a central data repository for nematode biology. Initially created as a service to the Caenorhabditis elegans research field, WormBase has evo...
Todd W. Harris, Igor Antoshechkin, Tamberlyn Bieri...