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» A Generalization of Automatic Sequences
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ISPD
2003
ACM
79views Hardware» more  ISPD 2003»
14 years 3 months ago
Floorplanning of pipelined array modules using sequence pairs
Floorplanning individual pipelined array modules of a larger overall die can yield beneficial results. Critical paths in every pipeline stage of a pipelined design are roughly equ...
Matthew Moe, Herman Schmit
BMCBI
2010
152views more  BMCBI 2010»
13 years 10 months ago
Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis
Background: One of the challenges of bioinformatics remains the recognition of short signal sequences in genomic DNA such as donor or acceptor splice sites, splicing enhancers or ...
Jens Keilwagen, Jan Grau, Stefan Posch, Ivo Grosse
BMCBI
2010
103views more  BMCBI 2010»
13 years 10 months ago
PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship
Background: Post-translational modifications (PTMs) have a key role in regulating cell functions. Consequently, identification of PTM sites has a significant impact on understandi...
Inkyung Jung, Akihisa Matsuyama, Minoru Yoshida, D...
BMCBI
2007
153views more  BMCBI 2007»
13 years 10 months ago
Lower bounds on multiple sequence alignment using exact 3-way alignment
Background: Multiple sequence alignment is fundamental. Exponential growth in computation time appears to be inevitable when an optimal alignment is required for many sequences. E...
Charles J. Colbourn, Sudhir Kumar
JUCS
2006
141views more  JUCS 2006»
13 years 10 months ago
Constraint Based Methods for Biological Sequence Analysis
: The need for processing biological information is rapidly growing, owing to the masses of new information in digital form being produced at this time. Old methodologies for proce...
Maryam Bavarian, Verónica Dahl