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BMCBI
2006
106views more  BMCBI 2006»
13 years 8 months ago
Gene and protein nomenclature in public databases
Background: Frequently, several alternative names are in use for biological objects such as genes and proteins. Applications like manual literature search, automated text-mining, ...
Katrin Fundel, Ralf Zimmer
ER
2007
Springer
87views Database» more  ER 2007»
14 years 2 months ago
Seed-Based Generation of Personalized Bio-ontologies for Information Extraction
Abstract. Biologists usually focus on only a small, individualized, subdomain of the huge domain of biology. With respect to their sub-domain, they often need data collected from v...
Cui Tao, David W. Embley
BIBM
2008
IEEE
217views Bioinformatics» more  BIBM 2008»
14 years 3 months ago
Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction
The study of gene function is critical in various genomic and proteomic fields. Due to the availability of tremendous amounts of different types of protein data, integrating thes...
Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon ...
NAR
2008
74views more  NAR 2008»
13 years 8 months ago
Gene Ontology annotations at SGD: new data sources and annotation methods
The Saccharomyces Genome Database (SGD; http:// www.yeastgenome.org/) collects and organizes biological information about the chromosomal features and gene products of the budding...
Eurie L. Hong, Rama Balakrishnan, Qing Dong, Karen...
BMCBI
2007
135views more  BMCBI 2007»
13 years 8 months ago
UbiProt: a database of ubiquitylated proteins
Background: Post-translational protein modification with ubiquitin, or ubiquitylation, is one of the hottest topics in a modern biology due to a dramatic impact on diverse metabol...
Alexander L. Chernorudskiy, Alejandro Garcia, Euge...