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» A complex biological database querying method
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BMCBI
2007
151views more  BMCBI 2007»
13 years 7 months ago
A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microar
Background: The incorporation of prior biological knowledge in the analysis of microarray data has become important in the reconstruction of transcription regulatory networks in a...
Peter Larsen, Eyad Almasri, Guanrao Chen, Yang Dai
BMCBI
2007
135views more  BMCBI 2007»
13 years 7 months ago
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput
Background: Due to the complex and distributed nature of biological research, our current biological knowledge is spread over many redundant annotation databases maintained by man...
Brad T. Sherman, Da Wei Huang, Qina Tan, Yongjian ...
PVLDB
2008
121views more  PVLDB 2008»
13 years 7 months ago
QueryScope: visualizing queries for repeatable database tuning
Reading and perceiving complex SQL queries has been a time consuming task in traditional database applications for decades. When it comes to decision support systems with automati...
Ling Hu, Kenneth A. Ross, Yuan-Chi Chang, Christia...
SIGMOD
2007
ACM
141views Database» more  SIGMOD 2007»
14 years 7 months ago
Assisted querying using instant-response interfaces
We demonstrate a novel query interface that enables users to construct a rich search query without any prior knowledge of the underlying schema or data. The interface, which is in...
Arnab Nandi, H. V. Jagadish
BMCBI
2002
109views more  BMCBI 2002»
13 years 7 months ago
Kangaroo - A pattern-matching program for biological sequences
Background: Biologists are often interested in performing a simple database search to identify proteins or genes that contain a well-defined sequence pattern. Many databases do no...
Doron Betel, Christopher W. V. Hogue