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» A factor analysis model for functional genomics
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BMCBI
2007
148views more  BMCBI 2007»
13 years 8 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
BMCBI
2007
148views more  BMCBI 2007»
13 years 8 months ago
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
Background: This work addresses the problem of detecting conserved transcription factor binding sites and in general regulatory regions through the analysis of sequences from homo...
Giulio Pavesi, Federico Zambelli, Graziano Pesole
JMLR
2012
11 years 10 months ago
A Stick-Breaking Likelihood for Categorical Data Analysis with Latent Gaussian Models
The development of accurate models and efficient algorithms for the analysis of multivariate categorical data are important and longstanding problems in machine learning and compu...
Mohammad Emtiyaz Khan, Shakir Mohamed, Benjamin M....
JCB
2002
87views more  JCB 2002»
13 years 7 months ago
The Repetitive Sequence Database and Mining Putative Regulatory Elements in Gene Promoter Regions
At least 43% of the human genome is occupied by repetitive elements. Moreover, around 51% of the rice genome is occupied by repetitive elements. The analysis of repetitive element...
Jorng-Tzong Horng, Hsien-Da Huang, Ming-Hui Jin, L...
ICSM
1997
IEEE
14 years 7 days ago
Predicting Maintenance Effort with Function Points
Function Point Analysis (FPA) is a well-known method to measure the functionality of a system, from the user’s point of view. Both Albrecht’s original model and a local varian...
Frank Niessink, Hans van Vliet