Abstract. Detecting repeated portions of strings has important applications to many areas of study including data compression and computational biology. This paper defines and pres...
We study the problem of enumerating substrings that are common amongst genomes that share evolutionary descent. For example, one might want to enumerate all identical (therefore co...
Stanislav Angelov, Boulos Harb, Sampath Kannan, Sa...
Background: Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in...
We study two pattern matching problems that are motivated by applications in computational biology. In the Closest Substring problem k strings s1, . . ., sk are given, and the tas...
Top-k queries are widely applied for retrieving a ranked set of the k most interesting objects based on the individual user preferences. As an example, in online marketplaces, cus...