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DAWAK
2007
Springer
14 years 2 months ago
An Efficient Algorithm for Identifying the Most Contributory Substring
Abstract. Detecting repeated portions of strings has important applications to many areas of study including data compression and computational biology. This paper defines and pres...
Ben Stephenson
RECOMB
2006
Springer
14 years 11 months ago
Efficient Enumeration of Phylogenetically Informative Substrings
We study the problem of enumerating substrings that are common amongst genomes that share evolutionary descent. For example, one might want to enumerate all identical (therefore co...
Stanislav Angelov, Boulos Harb, Sampath Kannan, Sa...
BMCBI
2007
106views more  BMCBI 2007»
13 years 11 months ago
Simultaneous identification of long similar substrings in large sets of sequences
Background: Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in...
Jürgen Kleffe, Friedrich Möller, Burghar...
SIAMCOMP
2008
121views more  SIAMCOMP 2008»
13 years 10 months ago
Closest Substring Problems with Small Distances
We study two pattern matching problems that are motivated by applications in computational biology. In the Closest Substring problem k strings s1, . . ., sk are given, and the tas...
Dániel Marx
PVLDB
2010
139views more  PVLDB 2010»
13 years 5 months ago
Identifying the Most Influential Data Objects with Reverse Top-k Queries
Top-k queries are widely applied for retrieving a ranked set of the k most interesting objects based on the individual user preferences. As an example, in online marketplaces, cus...
Akrivi Vlachou, Christos Doulkeridis, Kjetil N&osl...