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BMCBI
2006
144views more  BMCBI 2006»
13 years 8 months ago
ProFAT: a web-based tool for the functional annotation of protein sequences
Background: The functional annotation of proteins relies on published information concerning their close and remote homologues in sequence databases. Evidence for remote sequence ...
Charles Richard Bradshaw, Vineeth Surendranath, Bi...
ICCAD
2004
IEEE
121views Hardware» more  ICCAD 2004»
14 years 5 months ago
Factoring and eliminating common subexpressions in polynomial expressions
Polynomial expressions are used to compute a wide variety of mathematical functions commonly found in signal processing and graphics applications, which provide good opportunities...
Anup Hosangadi, Farzan Fallah, Ryan Kastner
FOGA
2011
13 years 9 days ago
The logarithmic hypervolume indicator
It was recently proven that sets of points maximizing the hypervolume indicator do not give a good multiplicative approximation of the Pareto front. We introduce a new “logarith...
Tobias Friedrich, Karl Bringmann, Thomas Voß...
BMCBI
2010
105views more  BMCBI 2010»
13 years 9 months ago
A knowledge-guided strategy for improving the accuracy of scoring functions in binding affinity prediction
Background: Current scoring functions are not very successful in protein-ligand binding affinity prediction albeit their popularity in structure-based drug designs. Here, we propo...
Tiejun Cheng, Zhihai Liu, Renxiao Wang
WWW
2005
ACM
14 years 9 months ago
PageRank as a function of the damping factor
PageRank is defined as the stationary state of a Markov chain. The chain is obtained by perturbing the transition matrix induced by a web graph with a damping factor that spreads...
Paolo Boldi, Massimo Santini, Sebastiano Vigna