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» Analyzing symmetry in biological systems
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BMCBI
2010
144views more  BMCBI 2010»
13 years 7 months ago
Identifying overrepresented concepts in gene lists from literature: a statistical approach based on Poisson mixture model
Background: Large-scale genomic studies often identify large gene lists, for example, the genes sharing the same expression patterns. The interpretation of these gene lists is gen...
Xin He, Moushumi Sen Sarma, Xu Ling, Brant W. Chee...
BMCBI
2007
200views more  BMCBI 2007»
13 years 7 months ago
BNDB - The Biochemical Network Database
Background: Technological advances in high-throughput techniques and efficient data acquisition methods have resulted in a massive amount of life science data. The data is stored ...
Jan Küntzer, Christina Backes, Torsten Blum, ...
BMCBI
2008
149views more  BMCBI 2008»
13 years 6 months ago
MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data
Background: Recent advances in global genomic profiling methodologies have enabled multidimensional characterization of biological systems. Complete analysis of these genomic prof...
Bryan Chi, Ronald J. deLeeuw, Bradley P. Coe, Raym...
BMCBI
2006
127views more  BMCBI 2006»
13 years 7 months ago
A graph-search framework for associating gene identifiers with documents
Background: One step in the model organism database curation process is to find, for each article, the identifier of every gene discussed in the article. We consider a relaxation ...
William W. Cohen, Einat Minkov
VIS
2006
IEEE
128views Visualization» more  VIS 2006»
14 years 9 months ago
Hierarchy-based 3-D Visualization of Homologous Gene Expression across Different Organisms
With the explosive growth of proteomic and expression data of homologous genes, it becomes necessary to explore new methods to visualize and analyze related gene expression data t...
Li Jin, Karl V. Steiner, Carl J. Schmidt, Keith...