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» Analyzing time series gene expression data
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BMCBI
2010
134views more  BMCBI 2010»
13 years 7 months ago
ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data
Background: Many high-throughput genomic experiments, such as Synthetic Genetic Array and yeast two-hybrid, use colony growth on solid media as a screen metric. These experiments ...
John C. Dittmar, Robert J. D. Reid, Rodney Rothste...
SAC
2004
ACM
14 years 1 months ago
Time-frequency feature detection for time-course microarray data
Gene clustering based on microarray data provides useful functional information to the working biologists. Many current gene-clustering algorithms rely on Euclidean-based distance...
Jiawu Feng, Paolo Emilio Barbano, Bud Mishra
BMCBI
2007
167views more  BMCBI 2007»
13 years 7 months ago
A stochastic differential equation model for transcriptional regulatory networks
Background: This work explores the quantitative characteristics of the local transcriptional regulatory network based on the availability of time dependent gene expression data se...
Adriana Climescu-Haulica, Michelle D. Quirk
BIBM
2007
IEEE
171views Bioinformatics» more  BIBM 2007»
14 years 2 months ago
GenMiner: Mining Informative Association Rules from Genomic Data
GENMINER is a smart adaptation of closed itemsets based association rules extraction to genomic data. It takes advantage of the novel NORDI discretization method and of the CLOSE ...
Ricardo Martínez, Claude Pasquier, Nicolas ...
JIIS
2000
119views more  JIIS 2000»
13 years 7 months ago
Knowledge Discovery from Series of Interval Events
Knowledge discovery from data sets can be extensively automated by using data mining software tools. Techniques for mining series of interval events, however, have not been conside...
Roy Villafane, Kien A. Hua, Duc A. Tran, Basab Mau...