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AHS
2006
IEEE
121views Hardware» more  AHS 2006»
14 years 1 months ago
Hardware/Software Coevolution of Genome Programs and Cellular Processors
The application of evolutionary techniques to the design of custom processing elements bears a strong relation to the natural process that led to the co-evolution of cells and gen...
Gianluca Tempesti, Pierre-André Mudry, Guil...
APBC
2004
13 years 9 months ago
A Rapid Method of Whole Genome Visualisation Illustrating Features in Both Coding and Non-coding Regions
The application of Fourier analysis to a genome can be used as an indicator of gene coding regions. We have developed a visualisation of the Fourier spectra that allows convenient...
Ross Hall, Linda Stern
FPL
2010
Springer
188views Hardware» more  FPL 2010»
13 years 5 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
IV
2009
IEEE
155views Visualization» more  IV 2009»
14 years 2 months ago
Visualizing Temporal Dynamics at the Genomic and Metabolic Level
We present an application for integrated visualization of gene expression data from time series experiments in gene regulation networks and metabolic networks. Such integration is...
Romain Bourqui, Michel A. Westenberg
BMCBI
2008
152views more  BMCBI 2008»
13 years 7 months ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...