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HPCA
2006
IEEE
14 years 10 months ago
Last level cache (LLC) performance of data mining workloads on a CMP - a case study of parallel bioinformatics workloads
With the continuing growth in the amount of genetic data, members of the bioinformatics community are developing a variety of data-mining applications to understand the data and d...
Aamer Jaleel, Matthew Mattina, Bruce L. Jacob
RECOMB
2006
Springer
14 years 10 months ago
Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer
Prokaryotic organisms share genetic material across species boundaries by means of a process known as horizontal gene transfer (HGT). Detecting this process bears great significanc...
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nak...
RECOMB
2006
Springer
14 years 10 months ago
Efficient Enumeration of Phylogenetically Informative Substrings
We study the problem of enumerating substrings that are common amongst genomes that share evolutionary descent. For example, one might want to enumerate all identical (therefore co...
Stanislav Angelov, Boulos Harb, Sampath Kannan, Sa...
RECOMB
2003
Springer
14 years 10 months ago
Large scale reconstruction of haplotypes from genotype data
Critical to the understanding of the genetic basis for complex diseases is the modeling of human variation. Most of this variation can be characterized by single nucleotide polymo...
Eleazar Eskin, Eran Halperin, Richard M. Karp
RECSYS
2009
ACM
14 years 4 months ago
Conceptual recommender system for CiteSeerX
Short search engine queries do not provide contextual information, making it difficult for traditional search engines to understand what users are really requesting. One approach ...
Ajith Kodakateri Pudhiyaveetil, Susan Gauch, Hiep ...