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» Constraint Based Methods for Biological Sequence Analysis
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RECOMB
2009
Springer
16 years 4 months ago
Storage and Retrieval of Individual Genomes
A repetitive sequence collection is one where portions of a base sequence of length n are repeated many times with small variations, forming a collection of total length N. Example...
Gonzalo Navarro, Jouni Sirén, Niko Väl...
DATE
2007
IEEE
112views Hardware» more  DATE 2007»
15 years 10 months ago
Tool-support for the analysis of hybrid systems and models
This paper introduces a method and tool-support for the automatic analysis and verification of hybrid and embedded control systems, whose continuous dynamics are often modelled u...
Andreas Bauer 0002, Markus Pister, Michael Tautsch...
120
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BMCBI
2007
102views more  BMCBI 2007»
15 years 4 months ago
A comprehensive system for evaluation of remote sequence similarity detection
Background: Accurate and sensitive performance evaluation is crucial for both effective development of better structure prediction methods based on sequence similarity, and for th...
Yuan Qi, Ruslan Sadreyev, Yong Wang, Bong-Hyun Kim...
DOCENG
2006
ACM
15 years 10 months ago
Fast and simple XML tree differencing by sequence alignment
With the advent of XML we have seen a renewed interest in methods for computing the difference between trees. Methods that include heuristic elements play an important role in pr...
Tancred Lindholm, Jaakko Kangasharju, Sasu Tarkoma
GECCO
2007
Springer
211views Optimization» more  GECCO 2007»
15 years 10 months ago
An extremal optimization search method for the protein folding problem: the go-model example
The protein folding problem consists of predicting the functional (native) structure of the protein given its linear sequence of amino acids. Despite extensive progress made in un...
Alena Shmygelska